Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46550 207 / 2e-60 DNA-binding bromodomain-containing protein (.1) AT5G14270 138 / 1e-34 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G63320 123 / 5e-30 NPX1 nuclear protein X1 (.1.2.3) AT3G27260 124 / 2e-29 GTE8 global transcription factor group E8 (.1.2) AT3G01770 123 / 2e-29 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G06230 118 / 1e-27 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 107 / 9e-25 GTE3 global transcription factor group E3 (.1) AT1G17790 99 / 5e-22 DNA-binding bromodomain-containing protein (.1) AT5G10550 95 / 3e-20 GTE2 global transcription factor group E2 (.1) AT5G65630 94 / 5e-20 GTE7 global transcription factor group E7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011989 [exp] 914 / 0 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 127 / 1e-30 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 127 / 1e-30 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10033623 [exp] 115 / 1e-26 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 115 / 1e-26 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 114 / 2e-26 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 93 / 1e-20 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10007096 [exp] 95 / 2e-20 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 94 / 8e-20 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355300 [exp] 382 / 8e-127 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.011G077100 [exp] 337 / 8e-109 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.015G091800 [exp] 140 / 5e-35 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 134 / 7e-33 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.012G094300 [exp] 131 / 4e-32 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.013G118900 [exp] 117 / 1e-27 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 115 / 6e-27 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 106 / 3e-24 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 103 / 8e-24 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 98 / 2e-21 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10002784 pacid=23164097 polypeptide=Lus10002784 locus=Lus10002784.g ID=Lus10002784.BGIv1.0 annot-version=v1.0 ATGGGGTCTGCTGAGACTGTTGTGAGCAGGAAGTTTCTGAAGATTAAATTTACCTCCCAGAAGGTTCAAGTTGCTCCTGCTGCAAATTCATTCGGTCTTG AGGGAAAGCCTTCTTTGGATCAGCCTTCTCATTCTCAGATTAGTGCCTCTGAAGAGTATTATGGTAAGAGTGTTGTACCTTGCTTGAAAAAACGCCGGTC GTCAGAAATATTAGACGAACGCCCAGGGAAGAGGCGTAGAATGGACCGTACTACTTCGCAGCAGTGCTCGGCTCTGCTGAAAGTGCTTCTTGGGCATCCA TATGGTTGGATTTTTATCAAGCCAGTGGATCCTGTCGAGCTGAATATTCCTGATTATTTCACGGTTATAACCAATCCGATGGATCTTGGGACGATAAACT CCAAGCTGTCCAAGAAGAAATATTTTGGTGCCGAAGATTTTGCTGCTGATGTTAGATTGACATTCGCCAACGCCATGCTGTATAACCCACCTAGCAACTC TGTGCACACGACAGCCCTGGAACTTCGTAATTTGTTCGATATGAGGTGGGATTTGTTGGAGGAAAAGTGGAGCCGTGAGCAAGCTAAGTATGGAACTGGG AAGTTACTGACTGAGCAGGTTAAGGAACAGAATCATGCTGAAACTCATCCTAAGAGCTCCAAATCATCTAAAGAGAAGAGGAAAAACAGCTCTATTGTGC CTGAAGCTGTTGAGGTTAAGCATGCCAAAGCTGCTGAAAGCTGTGCACAGAATTCACTTGAAGGTCCTGGACGTGCTCATGGACCTGTCAATGCAAAACC ATCAATGAGGATAATTGTTCGGAAATGTAGTACTTGCGGCAGGATCTCCTGTGGGTGTAACGTTCAGATGGATTCAAGAAATGCATTATCAGATGCATCT GGTGATGGGCTGCCTAGCAGAGATCATTTACAAAGCACTGGCGTCAGGAAATTGGACTGTCCGCCAGATGTTATCTCAACATCCCAGATGAGTAGATCCG ATCCAGATTCTGATGGTGCTGTGAGCGCTGCGGATGAAGATAACGTATGCCCGAGTTCTCAGCTTGCAGATCCTGTAACTGATGCAGTTTCAGTAGAAGA TTGGAGATCCAATGCTGTTGAAGTACAGCAAATGTCACCCAAAAGAGCCCTACGTGCTGCAATCATAAAGGAAAGATTTGCACACACAATCCTGAAGGCA AAGCATAAAACACTTCTCGATAATGGGGAGAAGGCTGACTTAACAAAGATTCAGCAGGAGAAGGAGAGGCTGCAAAGGATCCACAATGAAGAGAAGGCAA GGATTGAAGCCCAGATCAGGAAGGCTGAAACTGCCTTACGAAGGAAAGAAGAGATGGAGTTGAAGGAGCAAAGACAACGAGAAAGAGAAGCTGCACGAGC TGCTGTGTTGAAGATAGAGAGAAGTGTTGAAATCGAGGAAAACCGAGAGGTATTGAAAGAACTCGAGGATATATGCGGCTGTACGTTGTTGGTTATCACC ACCCCAAGAGCTGAAACTGCATACAGAGAGCTTGGAAGCCCTCTGGAGCGATTAGGCCTCTTCTTCAAGGACGAGACCGACAATGTGGATGATTTGTTAG ATGGAGATGGAGATGTCGAAGATGGTGAACTATTAGCTTGA
AA sequence Show only first row Show all	>Lus10002784 pacid=23164097 polypeptide=Lus10002784 locus=Lus10002784.g ID=Lus10002784.BGIv1.0 annot-version=v1.0 MGSAETVVSRKFLKIKFTSQKVQVAPAANSFGLEGKPSLDQPSHSQISASEEYYGKSVVPCLKKRRSSEILDERPGKRRRMDRTTSQQCSALLKVLLGHP YGWIFIKPVDPVELNIPDYFTVITNPMDLGTINSKLSKKKYFGAEDFAADVRLTFANAMLYNPPSNSVHTTALELRNLFDMRWDLLEEKWSREQAKYGTG KLLTEQVKEQNHAETHPKSSKSSKEKRKNSSIVPEAVEVKHAKAAESCAQNSLEGPGRAHGPVNAKPSMRIIVRKCSTCGRISCGCNVQMDSRNALSDAS GDGLPSRDHLQSTGVRKLDCPPDVISTSQMSRSDPDSDGAVSAADEDNVCPSSQLADPVTDAVSVEDWRSNAVEVQQMSPKRALRAAIIKERFAHTILKA KHKTLLDNGEKADLTKIQQEKERLQRIHNEEKARIEAQIRKAETALRRKEEMELKEQRQREREAARAAVLKIERSVEIEENREVLKELEDICGCTLLVIT TPRAETAYRELGSPLERLGLFFKDETDNVDDLLDGDGDVEDGELLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	0	1
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	1.4	0.9656
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	3.2	0.9481
AT1G08710			F-box family protein (.1.2)		Lus10009519 [exp]	4.0	0.9319
					Lus10033269 [exp]	4.0	0.9562
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	4.9	0.9545
AT3G61800			unknown protein		Lus10004000 [exp]	4.9	0.9355
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	6.9	0.9490
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	7.5	0.9437
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	8.4	0.9349
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	8.5	0.9452

Compare expression of checked genes

Lus10002784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.