Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18040 313 / 6e-109 LSP1, CUM1, AT.EIF4E1, EIF4E eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) AT1G29550 270 / 8e-92 Eukaryotic initiation factor 4E protein (.1) AT1G29590 265 / 3e-89 eIF4E3 eukaryotic translation Initiation Factor 4E3, Eukaryotic initiation factor 4E protein (.1.2) AT5G35620 178 / 2e-56 eIFiso4E, EIF(ISO)4E, EIF(ISO)4E, EIF4E2, EIF(ISO)4E, LSP1, LSP, EIF(ISO)4E, EIF(ISO)4E, EIF(ISO)4E LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) AT5G18110 117 / 2e-32 NCBP novel cap-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011988 [exp] 430 / 2e-155 AT4G18040 315 / 4e-110 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10005410 [exp] 333 / 8e-117 AT4G18040 318 / 3e-111 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015247 [exp] 325 / 9e-114 AT4G18040 322 / 1e-112 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015251 [exp] 241 / 5e-81 AT4G18040 241 / 3e-81 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10023733 [exp] 214 / 1e-70 AT5G35620 261 / 2e-89 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10011776 [exp] 211 / 2e-69 AT5G35620 263 / 4e-90 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10020282 [exp] 125 / 4e-35 AT5G18110 347 / 1e-122 novel cap-binding protein (.1) Lus10005704 [exp] 117 / 3e-32 AT5G18110 345 / 6e-122 novel cap-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077200 [exp] 332 / 8e-117 AT4G18040 299 / 1e-103 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Potri.010G066700 [exp] 220 / 8e-73 AT5G35620 254 / 1e-86 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.008G171100 [exp] 214 / 1e-70 AT5G35620 249 / 5e-85 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.013G057000 [exp] 122 / 4e-34 AT5G18110 358 / 6e-127 novel cap-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0625 [flax] [poplar] eIF4e PF01652 [flax] [poplar] IF4E Eukaryotic initiation factor 4E
Representative CDS sequence Show only first row Show all	>Lus10002785 pacid=23164119 polypeptide=Lus10002785 locus=Lus10002785.g ID=Lus10002785.BGIv1.0 annot-version=v1.0 ATGGCGATGGAGGAGTCTCAGAAATCGACACTGGACGACGTCTCGAACGGTGGAATGCCGGAGGGAGGAGAAAAAACCGTCGTAGACGACAATGAGAGCT CTTCCAAGAAAATGGCGACAGTTCAGACGCACCCGCTCGAACACCGATGGACTTTCTGGTTCGACAATCCTTCCGCCAAGTCCAAGCAGACCACCTGGGG AAGCTCCATGCGCTCCATCTTCACCTTCGGCACTGTCGAGGAATTCTGGAGTGTGTATAACAACATTCATCATCCAAGCAAACTAGCTGTGGGGGCAGAC TTCCATTGCTTCAAACATAAGATCGAGCCCAAGTGGGAGGATCCCGTCTGTGCTAATGGAGGGAAGTGGACTGTGACTTTTTCCAAAGGGAAATCCGATA CCTCTTGGCTGTATACGCTGCTAGCAATGATAGGGGAGCAGTTCGAACATGGAGATGAGATCTGCGGTGCTGTTGTCAATGTCAGAGCCAGGCAGGAGAA GATCGCCATCTGGACCAAGAATGCTTCCAATGAAGCCGCTCAGTTTGTTGAAGTGATGAATACCGGGTTCATTGTGCAGCTGAGTATCGGAAGGCAGTGG AAGGAGTTTCTTGACTACAAGGATACTATCGGGTTCATTTTCCATGAGGACGCGAAGAGGCTCGACAGAGGTGCCAAGAATCGCTACTCTATCTAA
AA sequence Show only first row Show all	>Lus10002785 pacid=23164119 polypeptide=Lus10002785 locus=Lus10002785.g ID=Lus10002785.BGIv1.0 annot-version=v1.0 MAMEESQKSTLDDVSNGGMPEGGEKTVVDDNESSSKKMATVQTHPLEHRWTFWFDNPSAKSKQTTWGSSMRSIFTFGTVEEFWSVYNNIHHPSKLAVGAD FHCFKHKIEPKWEDPVCANGGKWTVTFSKGKSDTSWLYTLLAMIGEQFEHGDEICGAVVNVRARQEKIAIWTKNASNEAAQFVEVMNTGFIVQLSIGRQW KEFLDYKDTIGFIFHEDAKRLDRGAKNRYSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	0	1
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10030278 [exp]	1.0	0.9163
					Lus10024825 [exp]	1.4	0.8100
					Lus10006316 [exp]	21.2	0.8078
					Lus10000761 [exp]	23.7	0.6332
					Lus10004923 [exp]	28.0	0.7827
AT4G03220			Protein with RNI-like/FBD-like...		Lus10018509 [exp]	28.3	0.6380
					Lus10033923 [exp]	28.6	0.7845
AT3G54750			unknown protein		Lus10012287 [exp]	33.8	0.7832
					Lus10042085 [exp]	51.4	0.7240
AT3G52680			F-box/RNI-like/FBD-like domain...		Lus10029997 [exp]	52.4	0.7574

Compare expression of checked genes

Lus10002785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.