Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17570 342 / 8e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 265 / 1e-88 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 263 / 3e-88 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58784 129 / 2e-35 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58770 122 / 6e-33 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 118 / 2e-31 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 115 / 5e-30 ACPT cis-prenyltransferase (.1) AT5G58782 112 / 2e-29 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23400 108 / 3e-28 Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032757 [exp] 558 / 0 AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005789 [exp] 380 / 1e-132 AT2G17570 316 / 2e-107 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10036178 [exp] 139 / 2e-38 AT5G58770 357 / 7e-123 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10038313 [exp] 137 / 2e-38 AT5G58770 351 / 8e-122 Undecaprenyl pyrophosphate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039400 [exp] 258 / 4e-86 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.005G100800 [exp] 259 / 3e-85 AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G312700 [exp] 136 / 3e-38 AT5G58770 294 / 2e-99 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.009G045500 [exp] 119 / 2e-31 AT5G58770 325 / 1e-111 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G250900 [exp] 117 / 4e-31 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [flax] [poplar] Prenyltransf Putative undecaprenyl diphosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10002788 pacid=23169932 polypeptide=Lus10002788 locus=Lus10002788.g ID=Lus10002788.BGIv1.0 annot-version=v1.0 ATGGATAAAGTTAATGGGAGATCCGTTGGGTTGCTGGGGAGGTGTAGTAGTTTTGTGAGAGCTTGCATGTTTAGAGTTCTATGTACAGGTCCAATCCCAA CCCATTACTCCTTCATAATGGACGGGAATCGTAGGTATGCTAAAAAGATGAACATGGAAGAAGGTGCAGGTCACAGGGCTGGTTTCTTCGCTCTTGTGTC TGTGCTCAAGTGCTGTTACGAACTGGGAGTGAAGTATATCTCGATCTATGCCTTCAGCATTGATAATTTCAAAAGGCGGCCTGATGAAGTGAAGACTATA ATGGATTTGATTCTTGAGAAGACTGAGGGTTTGCTTGAGGAAGGAAGTATTGCAGACCAGTACGGCGTCAGGGTGTACTTTGTTGGTAACTTGAAGCTCC TGAATGAGCGTATGAGAAATGCAGCTGAGGAGGTTATGAAGGCTACTGCACATAACACCAAGTGTGTGCTCTTGATATGCATCGCCTACACCTCCTACGA CGAGATTGTGCATTCTGTGCGGGAGTCTTGTAAAGACAAACTGGTGGAGATTGAATCAACATCTTGTGAAAATGTTGGGAATGAAGGTGAGGATTATTTG GCGATAGAAGTGGTTGACATAGAGAAACACATGTACATGGCCGTGGCTCCTGATCCAGACATCCTGTTGAGAAGTTCTGGGGAGATGCGGTTGAGCAACT ACTTGCTGTGGCAGACCACTTACTGCACATTGTATTCTCCAAAAGCACTGTGGCCAGAGATTGGTCTGTGGCATGTTGAATGGGGAATACTGAAATTCCA ACGCAGCTATGCTTACTTTGAGAAAGAGAAGAAGAAGATAGCTTAG
AA sequence Show only first row Show all	>Lus10002788 pacid=23169932 polypeptide=Lus10002788 locus=Lus10002788.g ID=Lus10002788.BGIv1.0 annot-version=v1.0 MDKVNGRSVGLLGRCSSFVRACMFRVLCTGPIPTHYSFIMDGNRRYAKKMNMEEGAGHRAGFFALVSVLKCCYELGVKYISIYAFSIDNFKRRPDEVKTI MDLILEKTEGLLEEGSIADQYGVRVYFVGNLKLLNERMRNAAEEVMKATAHNTKCVLLICIAYTSYDEIVHSVRESCKDKLVEIESTSCENVGNEGEDYL AIEVVDIEKHMYMAVAPDPDILLRSSGEMRLSNYLLWQTTYCTLYSPKALWPEIGLWHVEWGILKFQRSYAYFEKEKKKIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10002788 [exp]	0	1
AT3G60540			Preprotein translocase Sec, Se...		Lus10037570 [exp]	3.3	0.8889
AT1G12400			Nucleotide excision repair, TF...		Lus10006998 [exp]	4.5	0.8606
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	5.2	0.8549
AT4G20150			unknown protein		Lus10038391 [exp]	8.9	0.8393
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10021024 [exp]	11.4	0.8159
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	16.1	0.8520
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	28.8	0.8504
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10014815 [exp]	30.0	0.8063
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	30.3	0.8073
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Lus10006096 [exp]	32.5	0.8195

Compare expression of checked genes

Lus10002788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.