Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21860 375 / 2e-127 violaxanthin de-epoxidase-related (.1) AT1G08550 42 / 0.0004 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032756 [exp] 584 / 0 AT2G21860 699 / 0.0 violaxanthin de-epoxidase-related (.1) Lus10021986 [exp] 42 / 0.0005 AT1G08550 595 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) Lus10042524 [exp] 42 / 0.0005 AT1G08550 592 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085800 [exp] 397 / 1e-135 AT2G21860 700 / 0.0 violaxanthin de-epoxidase-related (.1) Potri.013G053100 [exp] 44 / 0.0002 AT1G08550 585 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002789 pacid=23169934 polypeptide=Lus10002789 locus=Lus10002789.g ID=Lus10002789.BGIv1.0 annot-version=v1.0 ATGCCTCCGGAAGCATGTACGGTACTACATCTCCGCCATTTCTCATCTCCATTAATGCTCAGCCGCCGCCTCGCCGCCGTTAGTATTCAACCTACGTGCT ATCACCACAAGGATGCATCCTCAGTTCTCCCTTTTCCTTCCCCTTTGTCTTTCCGTCCACGCCCAACCAGAGCATCCGCCATTCTCCAGCCGGAGAATTG TACAGCTGCTGAGCAACCTGGGCCGCCTGTGAAGATTGTGACCATAGTTGGTGTTGGAAGCATTAGCCCTCTGAAAGCCACTACATGGGAAGAGGTCATG CTCCACACTATAAGAATCATCTCTCTTACTGAATTTTTGAACCAGGCTACAAGGTTGAAATGGGTAGATGAAGGGTATGAAATGCTGGTTTTCATCGACA ATTTAGATGAATCTGAAAATACCAAGATTTTGGAGAAGGAACTGAAGGGTGCTGATATATTGCTTATAGTTGCTGTTACCAATCAAGGATCAGTTGATTG GATCCAGAACAAAAGCAAACATGTTCAGAACATCATCTGTTTTGATTCCTCTTCGAAGCTTGCAAACAAGCTCGGTGGATTTTATGTTAAGGAGGAGGGT AAAGAATCAAAGGAAGTCGTGGAGACTGTGTCTGAAGCCTGGACAAGGCATAACACGGATGACATAAGGTTCTGCTTATTGGTAGTCATCAATGCATATA TAAGGCCAGTTCCTATTCTGAAGAACCTAAGATCAAAAGGCTTATCAACTCTAAGCTGCATTACCAAGAACTGTGGACGTCAGATATTCGATTGCCTACT GGATCCTAACTGCAGGAAGGCTCTGCAGTGCCTCAACCGTTGTAGCCCTGTAGACCAGGTCTGTAACTATAGATGCATCGCCTCGTATGAGAGTCCAAAG CTTGAGGCATTCTCTCTGTGTGTACCGCAGAAGCACAACTGTCTTGAATTGGATGCCAAGATTCCTCAACAGCCTCGTGTACAGCCGATGGTCAAGTTTC GAGGGCAGGACTTGACTCATGAGATAGCTGAGGATCTTTTTGTAGGTTGGTTAGGGAGTCTTGAGTAG
AA sequence Show only first row Show all	>Lus10002789 pacid=23169934 polypeptide=Lus10002789 locus=Lus10002789.g ID=Lus10002789.BGIv1.0 annot-version=v1.0 MPPEACTVLHLRHFSSPLMLSRRLAAVSIQPTCYHHKDASSVLPFPSPLSFRPRPTRASAILQPENCTAAEQPGPPVKIVTIVGVGSISPLKATTWEEVM LHTIRIISLTEFLNQATRLKWVDEGYEMLVFIDNLDESENTKILEKELKGADILLIVAVTNQGSVDWIQNKSKHVQNIICFDSSSKLANKLGGFYVKEEG KESKEVVETVSEAWTRHNTDDIRFCLLVVINAYIRPVPILKNLRSKGLSTLSCITKNCGRQIFDCLLDPNCRKALQCLNRCSPVDQVCNYRCIASYESPK LEAFSLCVPQKHNCLELDAKIPQQPRVQPMVKFRGQDLTHEIAEDLFVGWLGSLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	0	1
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10032522 [exp]	1.4	0.8963
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	2.4	0.8885
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	7.1	0.8767
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10036858 [exp]	9.8	0.8615
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041392 [exp]	10.7	0.8218
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	11.2	0.8615
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	12.0	0.8332
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10018503 [exp]	13.0	0.8440
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10037318 [exp]	14.4	0.8479
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	16.7	0.8354

Compare expression of checked genes

Lus10002789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.