Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 644 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 444 / 1e-150 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 436 / 2e-147 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 422 / 6e-142 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 419 / 4e-141 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 398 / 6e-133 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 365 / 6e-120 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 301 / 5e-95 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 290 / 1e-90 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G51680 281 / 2e-87 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036994 [exp] 466 / 3e-159 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015999 [exp] 401 / 2e-133 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 397 / 4e-132 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 401 / 6e-131 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 382 / 2e-126 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 380 / 1e-125 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 365 / 1e-119 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 360 / 4e-118 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 358 / 5e-117 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G094800 [exp] 681 / 0 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 657 / 0 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 620 / 0 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 610 / 0 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 561 / 0 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 469 / 1e-160 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 427 / 8e-144 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 421 / 8e-142 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 401 / 1e-133 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 390 / 2e-129 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10002791 pacid=23169933 polypeptide=Lus10002791 locus=Lus10002791.g ID=Lus10002791.BGIv1.0 annot-version=v1.0 ATGGCCGCCCCCGCTACACCTCACCGGAGCGACAATTCCGTCGATCCCTACACCGGATTCTGCAGCACCACCAAAATCTTCCACAGCCTGAGGCCTCCTG CGCCCCTCCCTCCTATTGACCTGCCTCTCTCCATCGTACACTACGCCTCCGACCTCCTTTGCTCATCCCCCACCGTCTCCGACCTATCCTCCGCAATTTT CGTCATCGATGCAGCTACCGGCGACGTCCTCACCTACGCTTCCTTCCTCCGTCAAACCCTCTCCCTCTCCCTCGCCTTGAAAAGGCTCTACCCTTCTCTG TTACCAAACGACGTCGCATTCATCGTCTGCCCATCTTCTGTCCACATACCCATCCTCTACTTCGCCCTCATGTCAATTGGCGTCACAATCTCGCCTTCCA ACCCGCTGAGTTCCCACTCCGAGCTGGCTCACCAAATCCAACTCACTCAACCTAAAATCGCCTTTGCTACTTCCCAAACAGCCTCTAAGCTCCCTTCTCA TCTTCTCCCTCTAGGCACCTTTCTAATTGACTCTCCTCAATTTCAATCTCTATTAACCGAGCTGGATAGTCCTGTTCCGGTTGCCCAATCCCAATCCGCC GTTGTAAGGCAATCCGACACGGCTGCCATTTTGTACTCCTCGGGAACCACGGGGAAGGTGAAGGGAGTGAGATTGAGCCATCGGAACGTAATCGCCCTAA CTTCCGGGTTTTACCACAACAGGCGGGAGTACGAGCCGGGGCAACCCGAACCGCATCCGGTTGCGCTCATCACGGTGCCACTGTTCCATGTATTTGGGTT CTTTATGTTGGTGAAAGGGATTGCAATAGGCGAGACGCTGGTTCTGATGCAGAGGTTCGATTTCGAAGGGATGCTTCGGGCTGTGGAGAAGTACAAGGTG ACTTACATGCCGGTATCTCCGCCGCTCATCGTGGGGATGCTCAAGTCGGAGTTGACCAATAAGTATGATTTGAGCTCTCTCTTAGTTTTGGGCTGCGGCG GGGCTCCACTCGGCAAGGATGTTGCCGAAAAGTTCAAGGACAAATTCCCAAATGTGGATATCATCCAGGGATATGGATTGACGGAAACTGGGGGAGGAGG GACACGAATGATTGATGCTGAGGAGAGTAAAAATTATGGGTCAGCTGGTAAGTTATCGGAGAATCTGGAAGCTAAAGTTGTGGATACTGAAACAGGGGAG GCTCTGGGACCTGAGCAGAGAGGGGAGATATGGTTGAGAGGCCCAGTCATCATGCAAGGGTATGTTGGGAATGACAAGGCAACTGCTGAAACTTTGGATC GGGAGGGATGGTTGAAGACCGGGGATCTTGGTTACTTCAACTCTCAAGGCCACCTCTACATCGTTGACAGGCTCAAGGAGTTGATCAAATACAAGGCTTA TCAGGTTCCACCTGTAGAGTTGGAGCAGTTGCTTCAGTCAAACCCTAAAATAGCTGATGCTGCTGTAATCCCGTATCCTGATGAAGATGCAGGGGAAATC CCCATGGCATTTGTGGTGAGGAAACCAGGGTTCAATCTTACAGAATCTCAAGTCATGGAATTTGTCGCTAAGCAGGTAGCACCATACAAGAAAGTAAGGA AAGTGGCTTTCGTGAATTCCATTCCGAAATCACCTGCGGGGAAGATTTTGCGGCGGGAGCTTGTGAAGATTGCTGTCTCTGCTCCTGCATCTAAGTTGTG A
AA sequence Show only first row Show all	>Lus10002791 pacid=23169933 polypeptide=Lus10002791 locus=Lus10002791.g ID=Lus10002791.BGIv1.0 annot-version=v1.0 MAAPATPHRSDNSVDPYTGFCSTTKIFHSLRPPAPLPPIDLPLSIVHYASDLLCSSPTVSDLSSAIFVIDAATGDVLTYASFLRQTLSLSLALKRLYPSL LPNDVAFIVCPSSVHIPILYFALMSIGVTISPSNPLSSHSELAHQIQLTQPKIAFATSQTASKLPSHLLPLGTFLIDSPQFQSLLTELDSPVPVAQSQSA VVRQSDTAAILYSSGTTGKVKGVRLSHRNVIALTSGFYHNRREYEPGQPEPHPVALITVPLFHVFGFFMLVKGIAIGETLVLMQRFDFEGMLRAVEKYKV TYMPVSPPLIVGMLKSELTNKYDLSSLLVLGCGGAPLGKDVAEKFKDKFPNVDIIQGYGLTETGGGGTRMIDAEESKNYGSAGKLSENLEAKVVDTETGE ALGPEQRGEIWLRGPVIMQGYVGNDKATAETLDREGWLKTGDLGYFNSQGHLYIVDRLKELIKYKAYQVPPVELEQLLQSNPKIADAAVIPYPDEDAGEI PMAFVVRKPGFNLTESQVMEFVAKQVAPYKKVRKVAFVNSIPKSPAGKILRRELVKIAVSAPASKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63380			AMP-dependent synthetase and l...		Lus10002791 [exp]	0	1
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	5.3	0.8078
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037339 [exp]	7.9	0.8052
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	13.2	0.7754
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	13.7	0.7910
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	14.0	0.8022
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10032787 [exp]	18.7	0.7649
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	18.8	0.8075
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	19.0	0.7944
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042796 [exp]	19.3	0.7551
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	19.7	0.7685

Compare expression of checked genes

Lus10002791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.