Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27040 375 / 6e-124 Major facilitator superfamily protein (.1.2) AT1G59740 367 / 9e-121 Major facilitator superfamily protein (.1) AT1G69850 365 / 5e-120 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G33440 353 / 4e-115 Major facilitator superfamily protein (.1) AT2G02040 347 / 5e-113 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G62730 345 / 3e-112 Major facilitator superfamily protein (.1) AT1G68570 344 / 9e-112 Major facilitator superfamily protein (.1) AT5G01180 328 / 1e-105 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 322 / 3e-103 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G12110 321 / 7e-103 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032876 [exp] 709 / 0 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 704 / 0 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10005417 [exp] 430 / 4e-145 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10015240 [exp] 426 / 2e-143 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10037217 [exp] 377 / 2e-124 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 371 / 3e-122 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10024457 [exp] 366 / 7e-120 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1) Lus10033101 [exp] 363 / 3e-119 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10030799 [exp] 358 / 3e-117 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036200 [exp] 655 / 0 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 650 / 0 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 441 / 3e-149 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 427 / 2e-143 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.001G272900 [exp] 424 / 2e-143 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 398 / 2e-132 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 387 / 3e-128 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 375 / 8e-124 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.010G100200 [exp] 360 / 5e-118 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.019G067500 [exp] 357 / 2e-116 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10002793 pacid=23169929 polypeptide=Lus10002793 locus=Lus10002793.g ID=Lus10002793.BGIv1.0 annot-version=v1.0 ATGGAAGGATTGGAAAACATGGCATTCGTGGCAAATGCCCTGAGTCTGGTGACGTACTTCTATAACTTCATGAACTTTGGGTTAACAAAATCAGTGAACA CACTTACCAACTTCATGGGAACTGCCTTTGTGCTCTCACTCTTTGGAGGCTTCCTCTCTGACACCTATTTGTCCAAGTTCATAGCTTCCACACTCTTTGC TAGTTTTGAGCTCTTGGGATATGCTCTATTAACATTCCAAGCACATTTCAACCAACTGCGACCCAAGCCGTGCAACGGAGGTCAACTGATCAACCCGAGC CAATGTGATTCTGCAACGACGGGCCAGTCTGCCATCCTTTTCGCAGGGCTATACCTCATAGCTTTCGGGGCAGGCGGCCTAAGGGCGGCACTTCCAGCAT TGGGTGCTGACCAATTCGATCCGAAGAACCCAAAGGAGGCTCCTAAACTTTCCTACTTCTTTAATTGGTTCTTCTTTAGCTTGGTTGCTGGATCCATGGT TGGTGTAACGTTGATAGTGTGGATAGCGGAAAACAAGGGATGGGACTTGGGGTTTGGTGTCTCTGCCTTGGCTGTCTTGCTTTCCATCTTTTGCATTGGC ATTGGCAAGCCCTTTTACCGCATCGTTCCTCCTGCCGGAAGCCCTTTCATTCGAATTGCACAGGTGCTTGTAGCTGCAATGAGGAACAGACACTTCCAAA CCCCAAAGGTGGAAGACCAACTATATGAGAAAGAAGGAATTAATGGTGAAGTTCTTGTAAGAACACATCAATTCAGGTTCTTAGACAAGGCAGCAGTTGT AAGAATTGAAACTTATGCAACACCAGATCCGTGGAGACTATGCACAGTGACACAAATTGAGGAAACAAAGATCCTAATCCGAATGCTCCCAATCATTCTC AGTACAGTCTTCATGAACACATGTCTAGCTCAACTCCAGACCTTTACAACCCAACAGGGTACAACCATGGACAGAAACCTAGGTGGATTTCTTGTACCGG CATCTTCGGTACCAATAATCCCCTTGGTATTCATGTTCATCTTCATCCCTTTCTACGATCGAGTATTCATCCCATTAGCTCGTAGGTTCACGGGAATCCC TAGCGGGGTTCGCCACCTCCAAAGAATTGGAGTCGGTCTGTTGCTCTCGGCCGTGTCCATGGCAGTTGCTGGGTTGATCGAAACAAAACGCAAGAACGTA GCTATTGAACACAATATGGTGGACTCACTACTCCCATTGCCTTACAGTTTGTTCTGGCTTGGGTTTCAGTATGGCATTTTTGGTGCAGCGGAATTTCTTA CTTTTGTTGGTTTGATAGAGTTCTTCTACTCTGAGAGCTCGGCTGGGATGAAGGCGTTGGGGACTGGGATCTCAATGTGTTCCACCTCCTTCGGGTATTA CTTGAGCTCTGTGGTCGTGGATATCGTGAATGGAGTGAGTGGTGGGTGGTTGGCTGGCAACAATTTGAACAGAGTGAAGTTGAACTATTTCTACTGGATG TTGGCAGGGCTAAGCATTTTGAATTTTGGGGTTTACTTGATATGCGCTTCTTGGTACAGATACAAAGATGTTCAATTGGGGAAAAAAGAACACGTTGAAA TGGTGGTCGTTTAA
AA sequence Show only first row Show all	>Lus10002793 pacid=23169929 polypeptide=Lus10002793 locus=Lus10002793.g ID=Lus10002793.BGIv1.0 annot-version=v1.0 MEGLENMAFVANALSLVTYFYNFMNFGLTKSVNTLTNFMGTAFVLSLFGGFLSDTYLSKFIASTLFASFELLGYALLTFQAHFNQLRPKPCNGGQLINPS QCDSATTGQSAILFAGLYLIAFGAGGLRAALPALGADQFDPKNPKEAPKLSYFFNWFFFSLVAGSMVGVTLIVWIAENKGWDLGFGVSALAVLLSIFCIG IGKPFYRIVPPAGSPFIRIAQVLVAAMRNRHFQTPKVEDQLYEKEGINGEVLVRTHQFRFLDKAAVVRIETYATPDPWRLCTVTQIEETKILIRMLPIIL STVFMNTCLAQLQTFTTQQGTTMDRNLGGFLVPASSVPIIPLVFMFIFIPFYDRVFIPLARRFTGIPSGVRHLQRIGVGLLLSAVSMAVAGLIETKRKNV AIEHNMVDSLLPLPYSLFWLGFQYGIFGAAEFLTFVGLIEFFYSESSAGMKALGTGISMCSTSFGYYLSSVVVDIVNGVSGGWLAGNNLNRVKLNYFYWM LAGLSILNFGVYLICASWYRYKDVQLGKKEHVEMVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	0	1
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	1.0	0.9353
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	1.4	0.9347
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	1.7	0.9321
					Lus10040690 [exp]	2.8	0.9055
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	3.9	0.9006
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	4.2	0.9004
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	4.5	0.8868
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10035936 [exp]	6.2	0.8857
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	6.9	0.8950
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	7.0	0.8973

Compare expression of checked genes

Lus10002793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.