Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25210 75 / 2e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 72 / 2e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 70 / 1e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 68 / 4e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 67 / 1e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 66 / 3e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00250 59 / 7e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 57 / 2e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00238 54 / 2e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 52 / 8e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005506 [exp] 405 / 6e-143 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 343 / 4e-118 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 168 / 5e-51 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 169 / 3e-50 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10017793 [exp] 164 / 1e-49 AT1G66420 72 / 6e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 82 / 5e-18 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 64 / 1e-11 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 64 / 1e-11 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 62 / 1e-10 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293900 [exp] 156 / 3e-45 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 151 / 2e-43 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 70 / 1e-13 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 62 / 8e-11 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 56 / 7e-09 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 44 / 5e-05 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 41 / 0.0005 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10002794 pacid=23154594 polypeptide=Lus10002794 locus=Lus10002794.g ID=Lus10002794.BGIv1.0 annot-version=v1.0 ATGGAGGCCAAGTCTTCTTCTAAGGCAACGACTTCGAACGCTACTGCCTCAAAGGCGAGGAAGAGGGCAACCGAGACCGAGACTGAGGTGAAGGACACTA AGCGGCGGAAGGAGTCGTCTTCATCGGCCGCGGCGGAGAAAACTGAAGATTCCGCCAAGAAGCAACTGTTTCAACGCATCTGGGGGGAGGACGATGAGAT TGCTCTGTTAAACGGGCTTCTGGAGTTCTCAAAGAGAGGAGTGGATCCTTTCAAGGAGATAGCTGATGTGTACGATTTCGTCAAGAAATCTCTCAACATT GACATCTCTGTGTCTCAGCTGAAGGAGAAAGCTGCCCGGTTGAAGAAGAAGTTTACGAAGAAGTCCAACGGAAAAGATGGTGAAGATAAGAGCTTCGCCA AACAACATGACCAGAAGTGTTTCGACTTGTCCAAGAAGATCTGGGGCTCGGAAGCATCCAGCCGAGCTGTACAAGCCAGTAATAATGCTACTCCCAAGCC AAATAAAAAGGAAAAGGGCAACAGCAGCAATGGAATTACTCCTAAGCGACATGCGGGTGTAGAGGATGGCGCTGCAGATCGTAAGAAGGATATGTTGCCT GGGGAAGATATAAGGGATGTTGTGATTAAGAAGGGATTGGACATGGTGGAAGGATCAAAGAGGGGCGAGTTTGAGGAAAGATGGAAGGATGTGAATGTGG CAACTTTGAAGCTCTTTGTACAACGGGAGCAGTTGGTGGTTGATCAGGCTAAGTTGATGCTGGCTGCCATGGATGAGGATTAG
AA sequence Show only first row Show all	>Lus10002794 pacid=23154594 polypeptide=Lus10002794 locus=Lus10002794.g ID=Lus10002794.BGIv1.0 annot-version=v1.0 MEAKSSSKATTSNATASKARKRATETETEVKDTKRRKESSSSAAAEKTEDSAKKQLFQRIWGEDDEIALLNGLLEFSKRGVDPFKEIADVYDFVKKSLNI DISVSQLKEKAARLKKKFTKKSNGKDGEDKSFAKQHDQKCFDLSKKIWGSEASSRAVQASNNATPKPNKKEKGNSSNGITPKRHAGVEDGAADRKKDMLP GEDIRDVVIKKGLDMVEGSKRGEFEERWKDVNVATLKLFVQREQLVVDQAKLMLAAMDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10002794 [exp]	0	1
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	6.6	0.8869
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	8.2	0.8938
AT5G49210			unknown protein		Lus10032604 [exp]	8.7	0.8932
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	8.9	0.8982
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10012283 [exp]	12.6	0.8409
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10038825 [exp]	15.5	0.7932
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10005410 [exp]	17.7	0.8775
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	24.1	0.8829
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004235 [exp]	28.1	0.8710
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	28.9	0.8189

Compare expression of checked genes

Lus10002794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.