Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72610 261 / 2e-89 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT5G20630 242 / 6e-82 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G09560 143 / 8e-43 GLP5 germin-like protein 5 (.1) AT3G05930 133 / 8e-39 GLP8 germin-like protein 8 (.1) AT1G02335 133 / 9e-39 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G61750 129 / 2e-37 RmlC-like cupins superfamily protein (.1) AT5G26700 129 / 3e-37 RmlC-like cupins superfamily protein (.1) AT3G62020 128 / 8e-37 GLP10 germin-like protein 10 (.1.2) AT3G04200 127 / 2e-36 RmlC-like cupins superfamily protein (.1) AT5G39160 125 / 8e-36 RmlC-like cupins superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022020 [exp] 254 / 3e-86 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10010769 [exp] 253 / 5e-86 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 213 / 2e-70 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 211 / 2e-69 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 209 / 1e-68 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 207 / 6e-68 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 206 / 2e-67 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 206 / 3e-67 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 203 / 3e-66 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 293 / 8e-102 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 283 / 3e-98 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 252 / 1e-85 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.014G110400 [exp] 139 / 3e-41 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 135 / 1e-39 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.011G162200 [exp] 131 / 4e-38 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.015G068200 [exp] 130 / 7e-38 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 130 / 8e-38 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 130 / 1e-37 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 130 / 1e-37 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10002795 pacid=23154593 polypeptide=Lus10002795 locus=Lus10002795.g ID=Lus10002795.BGIv1.0 annot-version=v1.0 ATGATCCACATACTCTTCCTCTTTGCTCTGGTCCTCTCCCAAACTTGCCACGCATCAGATTTCTGCGTGGCGAAGCTAAAAGGTGCGGGAGGCCCCGCAG GGTACGCATGTAGAGACCCTGCAAAAGTCACTTCAGCTGACTTTGTGCACAAAGGCCTATCCTCCGCTGGCAACACCACAAACATCATCAATGCGATGGT CACCCCAGCATTCGTGATGCAGTTTCCTGCCGTCAACGGTCTGGGAGTATCCACAGCGAGACTCGACTTGGCCCCCGGTGGGGTTATCCCGATGCACACG CATCCAGCTGCCAATGAAGTCCTGTACGTGACATCCGGGGTCATCAAGGCAGGATTCATATCTTCGTCGTCGAATAAGGTGTACATTGAGACAGTGAAGA CAGGAGAATTGATGGTTTTCCCACAAGGGTTGTTGCACTTCCAAATCAATGCAGGTGGGAAGCCTGCTAGTGCTGTTGTCTTCTTCAACAGTCCTGATCC TGGTCTCCAGATTCTTGATTTTGCTCTGTTTGCTAATGACTTCCCTAGTGCCTTGCTCTCTGGCGTTACTTTCCTTGATGCTGCACAAATCAAGAAGCTT AAGGGTGTCCTTGGTGGCACTAATTAA
AA sequence Show only first row Show all	>Lus10002795 pacid=23154593 polypeptide=Lus10002795 locus=Lus10002795.g ID=Lus10002795.BGIv1.0 annot-version=v1.0 MIHILFLFALVLSQTCHASDFCVAKLKGAGGPAGYACRDPAKVTSADFVHKGLSSAGNTTNIINAMVTPAFVMQFPAVNGLGVSTARLDLAPGGVIPMHT HPAANEVLYVTSGVIKAGFISSSSNKVYIETVKTGELMVFPQGLLHFQINAGGKPASAVVFFNSPDPGLQILDFALFANDFPSALLSGVTFLDAAQIKKL KGVLGGTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	0	1
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	2.4	0.9649
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	4.2	0.9567
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	4.5	0.9533
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	5.5	0.9609
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10037881 [exp]	6.3	0.9136
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	6.5	0.9353
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	8.0	0.9547
AT1G22630			unknown protein		Lus10018614 [exp]	10.2	0.9479
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	10.4	0.9516
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10009220 [exp]	10.9	0.8979

Compare expression of checked genes

Lus10002795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.