Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25820 621 / 0 Exostosin family protein (.1) AT4G32790 615 / 0 Exostosin family protein (.1) AT5G19670 569 / 0 Exostosin family protein (.1) AT5G11610 513 / 1e-176 Exostosin family protein (.1.2) AT4G16745 488 / 5e-167 Exostosin family protein (.1.2) AT5G37000 466 / 1e-158 Exostosin family protein (.1) AT5G03795 352 / 2e-114 Exostosin family protein (.1) AT5G25310 330 / 2e-106 Exostosin family protein (.1) AT3G07620 318 / 5e-102 Exostosin family protein (.1) AT5G11130 304 / 2e-96 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000608 [exp] 1123 / 0 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 577 / 0 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 565 / 0 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 558 / 0 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 552 / 0 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 548 / 0 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 487 / 1e-166 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 470 / 2e-160 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10039142 [exp] 356 / 1e-115 AT5G03795 603 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043700 [exp] 691 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 679 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 608 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 557 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 546 / 0 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 502 / 1e-172 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 361 / 5e-118 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 354 / 3e-115 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 340 / 3e-110 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 325 / 1e-104 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10002799 pacid=23171445 polypeptide=Lus10002799 locus=Lus10002799.g ID=Lus10002799.BGIv1.0 annot-version=v1.0 ATGGGACAGGAAATTGGGTTGCGGTGCCAAGGGGAAAGCTGGAAACTGCTATCCCTTGTGGCCATTACTTTTGCACTGGCTGTAACCTTCCAATATATTG AACTTCCCTACGCAACTTTTTGGCCTTCTACTACGTCTTCTACTGCTAAGGCTATTGTGGATCCAGAGGCCAAAGGCTTGAACGACTCTTTTCCATTTGT TCTTGAGCATAGAAACAACTCCTCTAATGTCGAGGCGGCTGATGATGGTGATCCGGAAGATAGGACTGAAAATCTGGGTAAGGACTTTGTATCTCAAGGA GTCAACAAGTCTTCTGGCTCTTCTGATCAAGAGTTGCTTCTCACAAATAATTCTAACTCAACTTTGCTTCCCAAGAATAGTTCGGCTGATAATGCATCTG ATGTTTCCTTTGCACCCCAAACTGAAGGGTCTTCAGTTGTTGAACCACCTAAGGAGTCATCCAACAATATCTCTAGTACTATCCCAAAGATTGCAGATGC CAACGCTCCAAATCGTGCTGCATCTGTTGATTCCATGAAACCAGCAAATACTAACCAGGGCAGCAATAATGGCAAGTCAGACAAACTGCAAACTGACATT AGCAATGCAGATGCTAATCCTTCTCCTAAAAAAGTTGCAGAGAAGAGAAGGAAGCCTTCTGATGCTACAATAATACCAGCAGTGTTAACTATCTCGGAGA TGAACAGATTGATGCTTCAGAGTTGGACCGCTCCACATGTGATTAATCCACGATGGCCTTCGGCTGCTGACCAACAGCTTCGCCATGCGAGATCAGAAAT AGAACATGCACCGGTTACAGCAAATGATCCAATCCTTTATGCTCCTATCTACCGCAATGTATCCATGTTCAAGAGGAGTTATGAATTGATGGAAAACATG CTGAAAGTGTATGTTTATAGAGAAGGGGAAAGGCCAGTATTCCATCAGCCAGCACTGAGAGGGATCTATGCCTCTGAAGGATGGTTCATGAGACAGATGG AAAGCTACAAGAAATTCGTAACAAGAGACTCCAGGAAAGCTCACCTTTTTTACTTGCCTTTTGGTTCTCGCAATCTGGAAGAAGCGATGTATGTGCCGAA TTCACACAGTCATAAAAACCTCATACAGTATCTCAAGGACTACTTGGACATGGTCTCGGCAAAACATCCTTTCTGGAATAGAACAGACGGTGCTGACCAT TTTCTCGTTGCATGCCATGATTGGGCACCAGCTGAAACAAGACAATACATGTCGAATTCCATAAGAGCACTCTGCAACGCTGATGTTAAAGAAGGTTTCG TCTTCGGAAAGGACTCATCCCTTCCGGAGACTAACGTCCGAAATCCTCAGAAGCCTTTGAGAGACATTGGTGGGCAATCTGCTTCCAAGAGGTCAATCCT TGCCTTTTACGCAGGAAACATGCACGGCTATGTCAGGCCGATTCTGTTACAACACTGGCAGAACAAAGACCCTGATATTAAAGTATACGGGGTGATGCCA AAATCTAAAGGCAACAAGAACTACATTCAGCACATGAGGAGCAGCAAGTACTGCATCTGCCCCAAAGGGTACGAAGTCAACAGCCCTCGTGTCGTTGAGG CCATCTTTCATGAATGTGTTCCGGTGATCATCTCGGACAATTTCGTGCCTCCATTTTTTGAGGTGCTGAACTGGGAGTCGTTTGCGGTGTTTGTGCTGGA GAAGGACATTCCTAATCTGAAGAACATCCTGCTTTCCATCTCACAGAGGAGGTACCTGCAAATGCAGATGAGAGTGAAAAGGGTTCAGCAGCATTTTCTG TGGCATCCTAAGCCTGTCAAGTACGATGTATTTCACATGATACTTCACTCCATCTGGTATAACAGAGTGTTCCGGACATGA
AA sequence Show only first row Show all	>Lus10002799 pacid=23171445 polypeptide=Lus10002799 locus=Lus10002799.g ID=Lus10002799.BGIv1.0 annot-version=v1.0 MGQEIGLRCQGESWKLLSLVAITFALAVTFQYIELPYATFWPSTTSSTAKAIVDPEAKGLNDSFPFVLEHRNNSSNVEAADDGDPEDRTENLGKDFVSQG VNKSSGSSDQELLLTNNSNSTLLPKNSSADNASDVSFAPQTEGSSVVEPPKESSNNISSTIPKIADANAPNRAASVDSMKPANTNQGSNNGKSDKLQTDI SNADANPSPKKVAEKRRKPSDATIIPAVLTISEMNRLMLQSWTAPHVINPRWPSAADQQLRHARSEIEHAPVTANDPILYAPIYRNVSMFKRSYELMENM LKVYVYREGERPVFHQPALRGIYASEGWFMRQMESYKKFVTRDSRKAHLFYLPFGSRNLEEAMYVPNSHSHKNLIQYLKDYLDMVSAKHPFWNRTDGADH FLVACHDWAPAETRQYMSNSIRALCNADVKEGFVFGKDSSLPETNVRNPQKPLRDIGGQSASKRSILAFYAGNMHGYVRPILLQHWQNKDPDIKVYGVMP KSKGNKNYIQHMRSSKYCICPKGYEVNSPRVVEAIFHECVPVIISDNFVPPFFEVLNWESFAVFVLEKDIPNLKNILLSISQRRYLQMQMRVKRVQQHFL WHPKPVKYDVFHMILHSIWYNRVFRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25820			Exostosin family protein (.1)		Lus10002799 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10029722 [exp]	7.3	0.7700
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10016860 [exp]	8.7	0.8319
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	12.0	0.8009
AT3G62930			Thioredoxin superfamily protei...		Lus10005941 [exp]	13.1	0.7946
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	14.5	0.8244
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	17.9	0.7678
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	19.9	0.8226
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	20.6	0.7711
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	22.9	0.8043
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	27.9	0.7981

Compare expression of checked genes

Lus10002799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.