Plant FIBer expression Database

Lus10002800 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11600 107 / 6e-29 unknown protein
AT1G19990 75 / 3e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001603
[exp]
212 / 2e-70 AT5G11600 158 / 2e-48 unknown protein
Lus10033141
[exp]
88 / 6e-21 AT1G19990 132 / 2e-37 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G043800
[exp]
131 / 2e-38 AT5G11600 110 / 6e-30 unknown protein
Potri.006G238800
[exp]
124 / 1e-35 AT5G11600 137 / 2e-40 unknown protein
Potri.005G239600
[exp]
82 / 7e-19 AT1G19990 92 / 6e-22 unknown protein
PFAM info
Representative CDS sequence
>Lus10002800 pacid=23171447 polypeptide=Lus10002800 locus=Lus10002800.g ID=Lus10002800.BGIv1.0 annot-version=v1.0
ATGGCGCCAGAGACGAAGCAAAACTTGTCCAAATTGAAGCCCGGAAGCAGCAGCAATCAAGATGGTTCTAACCGCAAGAGGATTGAGAGCTCTAGTAAGC
AACCTGCTGATTCAAGGAATAAATCTGTCTCAACTGTCACTAGAACAGAGGTTAAAACAACAACGAGTACATCGAAGGCTACTACGAGTACGACAATCAA
AACTACTAGAGTGAGGGAGAAGAAAGTATTCTCCTTGACTGGCCAGAGATATGATCCCCCTGAAGAGAGAGAGCCTCTTAGGATTTTCTACGAGTCATTG
TCTAAACAGATACCGACTAGCGAGATGGCAGAGTTTTGGATGATGGAACATGGGTTGTTGTCCCCGGAGAGATCTAAGAAGGCATTCGAGAAGAAGCAGA
GAAAGCAAAAGATGCAGCGTATGGGCACTCCCATCAAATCTCCCAAAACACCAACTAAACCAGAGAGTTCTCAGAGGCAACAAACAGCATCGAAGAATGG
TGATTTGAAATCCAAGAAAAGAATAGTCGATGACAGTGACGATGATGATAACCTTGTTTTAAGTAAAAGGAGGAAACGGTAA
AA sequence
>Lus10002800 pacid=23171447 polypeptide=Lus10002800 locus=Lus10002800.g ID=Lus10002800.BGIv1.0 annot-version=v1.0
MAPETKQNLSKLKPGSSSNQDGSNRKRIESSSKQPADSRNKSVSTVTRTEVKTTTSTSKATTSTTIKTTRVREKKVFSLTGQRYDPPEEREPLRIFYESL
SKQIPTSEMAEFWMMEHGLLSPERSKKAFEKKQRKQKMQRMGTPIKSPKTPTKPESSQRQQTASKNGDLKSKKRIVDDSDDDDNLVLSKRRKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11600 unknown protein Lus10002800
[exp]
0 1
AT4G30993 Calcineurin-like metallo-phosp... Lus10040035
[exp]
1.0 0.8528
AT3G27230 S-adenosyl-L-methionine-depend... Lus10012420
[exp]
2.8 0.7318
AT3G27230 S-adenosyl-L-methionine-depend... Lus10024318
[exp]
10.2 0.7069
AT2G14110 Haloacid dehalogenase-like hyd... Lus10020444
[exp]
25.4 0.6849
AT4G36640 Sec14p-like phosphatidylinosit... Lus10023956
[exp]
53.3 0.6783
AT5G55990 ATCBL2, CBL2 calcineurin B-like protein 2 (... Lus10038764
[exp]
64.2 0.6377
AT3G51630 ATWNK5, ZIK1, W... with no lysine (K) kinase 5 (.... Lus10023776
[exp]
69.3 0.6862
AT5G47630 MTACP3 mitochondrial acyl carrier pro... Lus10039077
[exp]
97.7 0.6167
AT3G52950 CBS / octicosapeptide/Phox/Bem... Lus10035965
[exp]
102.0 0.6735
AT1G13310 Endosomal targeting BRO1-like ... Lus10041484
[exp]
116.3 0.6505

Lus10002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.