Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026843 [exp] 95 / 4e-24 ND / Lus10003415 [exp] 72 / 1e-16 ND / Lus10032968 [exp] 69 / 6e-15 ND / Lus10010056 [exp] 58 / 3e-11 ND / Lus10021601 [exp] 57 / 6e-11 ND / Lus10028090 [exp] 50 / 3e-08 ND / Lus10029530 [exp] 47 / 8e-07 ND / Lus10036287 [exp] 45 / 4e-06 ND / Lus10024537 [exp] 40 / 0.0004 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002802 pacid=23171444 polypeptide=Lus10002802 locus=Lus10002802.g ID=Lus10002802.BGIv1.0 annot-version=v1.0 ATGGTGCATCGGGAGACACATTGGATCCAGCAAACCCAGGACCGGCAGACTTGGCATATGGCATATTATCATGATGCGTACTTTGGGTTCCTTAACATGA CTCCGACTATCCGCCCCCCACCCCAGCACCACTTTCAGAATGCAGGAGCTGCATATCTCGGATACTACCTCCACCTGAGCGAGGAGCTCAACTACTATGG GTACTATCCCCACTTCCCGCCCTTCCAACCACCACCACCTCCACCACCGTTCGAGGGGTTCTTCGCCAAACTACACATCGGCCTCTATATCTCCACATCT CAGAAGGTGATCACCTTCTGGTTGGGAGGGAAGCTGCACAACATCTCTCTTGATAAGTTTGGGATACTACTAGGGTTGCACACAGAGGATGAGAGGGAGA GTGGCGACCTTTTTGGACTTACTACCATTGTTGGCACCGAGATCTCTGGTCATAAGGAGTTCTAG
AA sequence Show only first row Show all	>Lus10002802 pacid=23171444 polypeptide=Lus10002802 locus=Lus10002802.g ID=Lus10002802.BGIv1.0 annot-version=v1.0 MVHRETHWIQQTQDRQTWHMAYYHDAYFGFLNMTPTIRPPPQHHFQNAGAAYLGYYLHLSEELNYYGYYPHFPPFQPPPPPPPFEGFFAKLHIGLYISTS QKVITFWLGGKLHNISLDKFGILLGLHTEDERESGDLFGLTTIVGTEISGHKEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002802 [exp]	0	1
AT5G41720			unknown protein		Lus10011415 [exp]	5.3	0.6341
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10007142 [exp]	7.1	0.7188
					Lus10042671 [exp]	11.2	0.6519
					Lus10010603 [exp]	11.2	0.7002
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	14.7	0.6981
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	19.8	0.6974
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	23.6	0.6776
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	25.0	0.6751
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	30.0	0.6431
					Lus10033844 [exp]	31.7	0.6323

Compare expression of checked genes

Lus10002802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.