Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20140 179 / 2e-58 ASK4 SKP1-like 4 (.1) AT2G25700 172 / 3e-55 ASK3 SKP1-like 3 (.1) AT5G42190 170 / 2e-54 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT4G34210 166 / 4e-53 ASK11 SKP1-like 11 (.1) AT1G75950 164 / 1e-52 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT4G34470 164 / 2e-52 ASK12 SKP1-like 12 (.1) AT3G60010 162 / 1e-51 ASK13 SKP1-like 13 (.1) AT2G03170 157 / 1e-49 ASK14 SKP1-like 14 (.1) AT2G03190 142 / 2e-43 ASK16 SKP1-like 16 (.1) AT3G25650 140 / 9e-43 ASK15 SKP1-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005610 [exp] 174 / 2e-56 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017281 [exp] 174 / 3e-56 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 174 / 3e-56 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10013575 [exp] 171 / 3e-55 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10019794 [exp] 169 / 2e-54 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10019432 [exp] 164 / 1e-52 AT1G20140 186 / 2e-61 SKP1-like 4 (.1) Lus10014115 [exp] 171 / 1e-50 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10041874 [exp] 149 / 2e-46 AT4G34210 201 / 3e-67 SKP1-like 11 (.1) Lus10031747 [exp] 102 / 9e-28 AT2G03190 104 / 7e-29 SKP1-like 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175900 [exp] 176 / 4e-57 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.002G018700 [exp] 172 / 2e-55 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 172 / 2e-55 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 169 / 3e-54 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.005G243100 [exp] 168 / 4e-54 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G085200 [exp] 133 / 3e-40 AT4G34210 157 / 7e-50 SKP1-like 11 (.1) Potri.005G094800 [exp] 124 / 4e-36 AT3G21860 114 / 2e-32 SKP1-like 10 (.1) Potri.012G086900 [exp] 103 / 2e-28 AT4G34210 130 / 1e-39 SKP1-like 11 (.1) Potri.001G132300 [exp] 92 / 5e-24 AT1G75950 122 / 3e-36 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.016G028300 [exp] 79 / 1e-18 AT2G03170 79 / 6e-19 SKP1-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10002803 pacid=23158678 polypeptide=Lus10002803 locus=Lus10002803.g ID=Lus10002803.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACCAGGAGACCAACGACGAGAAGAAGAAGATGATCACGCTGAAATCGTCTGACAACGAGATTTTCGAGATAGAGGAGCCGGTCGCCCTCA TATCTGGCACGATCAAGAACATGATCGAGGACGACTGCGCCAACGAGGTCATCCCTATCGCCGAGGTCACCGCAAAGATCCTGACCAAGGTGATAGAGTA CTGCAAAGAGCACGTCGACAACAGCTTCGAATACAAGGTTTCCGAAAGCAAGTCGAAGTACACGGAGTTTGACAGTAACTTCACCAAGGACCTCATCAAG GATCAGAATACATTGTTCGACCTCGTATTGGCAGCTAACTACTTGAACATCAAGGGATTGCTGGACCTGACCTGCCAATACGTTGCGGACAATATAAAGG GGAAGACGCCGGAGCAGATTCGCGAGACATTCTACATCAAGAACGATTTCACCGAGGAGGAGGAAGCAGAGGTCCGGAAGGAGAATGCCTGGGCATTCGA GTGA
AA sequence Show only first row Show all	>Lus10002803 pacid=23158678 polypeptide=Lus10002803 locus=Lus10002803.g ID=Lus10002803.BGIv1.0 annot-version=v1.0 MAANQETNDEKKKMITLKSSDNEIFEIEEPVALISGTIKNMIEDDCANEVIPIAEVTAKILTKVIEYCKEHVDNSFEYKVSESKSKYTEFDSNFTKDLIK DQNTLFDLVLAANYLNIKGLLDLTCQYVADNIKGKTPEQIRETFYIKNDFTEEEEAEVRKENAWAFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	0	1
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	1.4	0.9566
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003296 [exp]	2.0	0.9343
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	4.9	0.7480
AT4G35500			Protein kinase superfamily pro...		Lus10035984 [exp]	6.7	0.8826
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10043362 [exp]	7.7	0.7238
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	9.8	0.7019
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10029847 [exp]	10.0	0.7623
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	15.4	0.7339
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	16.5	0.7339
					Lus10039432 [exp]	17.5	0.7339

Compare expression of checked genes

Lus10002803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.