Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 234 / 2e-70 Amidase family protein (.1) AT2G25470 71 / 1e-12 AtRLP21 receptor like protein 21 (.1) AT5G48380 69 / 3e-12 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G07390 69 / 5e-12 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 67 / 3e-11 AtRLP9 receptor like protein 9 (.1.2) AT5G49290 67 / 3e-11 ATRLP56 receptor like protein 56 (.1) AT1G74180 66 / 5e-11 AtRLP14 receptor like protein 14 (.1) AT3G53240 64 / 2e-10 AtRLP45 receptor like protein 45 (.1) AT5G25910 64 / 2e-10 AtRLP52 receptor like protein 52 (.1) AT1G74190 64 / 2e-10 AtRLP15 receptor like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002805 [exp] 260 / 4e-81 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10025066 [exp] 259 / 2e-79 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10034477 [exp] 196 / 3e-57 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10027855 [exp] 122 / 5e-33 AT2G25470 81 / 4e-19 receptor like protein 21 (.1) Lus10029288 [exp] 123 / 1e-31 AT1G07390 129 / 8e-34 receptor like protein 1 (.1.2.3) Lus10027856 [exp] 118 / 1e-27 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10027854 [exp] 92 / 1e-22 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10042381 [exp] 99 / 2e-21 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10030068 [exp] 82 / 7e-16 AT5G49290 397 / 3e-124 receptor like protein 56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169300 [exp] 352 / 2e-115 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 347 / 8e-114 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.009G130500 [exp] 196 / 8e-56 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171000 [exp] 192 / 2e-54 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.004G169400 [exp] 184 / 3e-52 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.009G130700 [exp] 181 / 3e-50 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 179 / 2e-49 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.001G064900 [exp] 86 / 4e-17 AT1G07390 290 / 7e-83 receptor like protein 1 (.1.2.3) Potri.001G065300 [exp] 85 / 5e-17 AT1G58190 390 / 4e-120 receptor like protein 9 (.1.2) Potri.001G065309 [exp] 84 / 5e-17 AT1G07390 294 / 6e-89 receptor like protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10002804 pacid=23158657 polypeptide=Lus10002804 locus=Lus10002804.g ID=Lus10002804.BGIv1.0 annot-version=v1.0 ATGCGTGGGATGGATTTCTCAAGCAACAATTTCACTGGAGAGATCCTTTCTGAAATTGGTCTCAAGCTCACATATATTACAGTGCTCAACTTATCCTACA ACAAGCTCGAAGGACAAACTCCATCGACGTTTTCAAACCTGCACCATATTGAAAGTACGGATCTTTCTCACGACAGCTTAAGCGGAAAGATCCCCCCTCA ACTCTCCGACCTTACAAGATGTGGGAATTTCGAGTGTACCAAAAATAAGAAAAGCCATCAAAAAAATGGCGAACTACGGCGGACGAATAACTCAGCTCCT CCTCCTCCTCCTCCTATCCGCAGCATTCTTCACCGTCGCTGCCTCACACTTTCCGTTCGAGGAAGCCACCGTCGACCAGATCCAGCTGTCCTTCGCCGAA AACACTTTACCTTCCAAACAGCTGATCGACTTCTACTTGGACCGAATCAACGACCTCAACCCCTACCTCCGCGGCGTACTGGAGCTGAATCCGGACGCGA TTCGCTAAGCCGAGGAGGCCGATTTGGTCAGATCGAAGTCGGATCGGAAGTTAGGGGATCTGCATGGCGTTCCTGTTCTGTTAAAGGATGGGATAGCGAC GAAGGATCTGATGAACACGACGCCAGCCAGAGCGAGTGGTACCGCGTCAGGTCTTTCCAGATTCCCAACGGGTGGTCCGCCAGAGGCGGCCAAGCTGTGA ATCCATACGTGAAAGGGGCAGATCCGTGCGGGTCGAGCAGCGGGTCAGCAATATCGGTAGCTGCAAACATGGTGGCAGTGTCACTAGGGACCGAAACCGA CCGTTCGATCCTCTGCCCGGCGGCTGATCACAACTCGGTTATCGGGTTCAAACCGACAGTCAGCTTAACCAGCCGGGCTGGAGTGATTCCCGTCTCCCCT CGCCAGGACAAGATCGGATTCACCGATTCGGTCTGGTGCAAGCCGATATGCAGGACAGTGTCGGACGCGGTCTACGTGCTAGAGGCAATTGTCGGGTTCG ACCCTCGCGATGGAGTAGCAATAAGAGAAGCATCAAAATTCATGCCTTGCGGTGGATACAAACAGTTTTCGGAAAAGGATGGCTTAAAGGGGAAAAGGAT AGGCATTGTCGCGATTAATCGTTACCTCGAAGAAGACCTCGTCGAATCGCCTGTGAGGTCGCTGGCTGACATCCTCGCGTTCAACGTGAATAACCCGTAC CCGAAACTGGAGAAAATGGAGGAGTTCGGGGAAGAATTTATGGCGGCAGCACAGATGACGAACGGGATAGGGAAGAACAAAACAGAGGCAATTCAGTTTA TGGACAATCTGTCGCAGGAAGGGTTCGAAGCAGTGATGAAAACACACGAGCTGGACGCACTGGTCACGATAGGCTCGGATGTCTCGTCGGTGCTAGCTAT TGGTGGGTACCCTGGGATTTCCGTCCTCGCTGGGTACGGTTCCGAAGGAAAGCCATTCGGGATTGTCTTCGGAGGGTTGAAAGGCACCGAGCCTAAGCTC ATCGAGGCTGCTTACTCGTTCGAGCAAGCAACGAAAGAACGTAAGCCCCCTCCTCCACACCTCTCCTCCTCCTTCCCATTGAACTCAAAGATGCATTGTT CTGCTTTGAGTTTTCGAGTTAAAATTTCGATGAACTACTATGCTTTGAATACATTAACCAGAGGGAAGGTTAAATGA
AA sequence Show only first row Show all	>Lus10002804 pacid=23158657 polypeptide=Lus10002804 locus=Lus10002804.g ID=Lus10002804.BGIv1.0 annot-version=v1.0 MRGMDFSSNNFTGEILSEIGLKLTYITVLNLSYNKLEGQTPSTFSNLHHIESTDLSHDSLSGKIPPQLSDLTRCGNFECTKNKKSHQKNGELRRTNNSAP PPPPPIRSILHRRCLTLSVRGSHRRPDPAVLRRKHFTFQTADRLLLGPNQRPQPLPPRRTGAESGRDSLSRGGRFGQIEVGSEVRGSAWRSCSVKGWDSD EGSDEHDASQSEWYRVRSFQIPNGWSARGGQAVNPYVKGADPCGSSSGSAISVAANMVAVSLGTETDRSILCPAADHNSVIGFKPTVSLTSRAGVIPVSP RQDKIGFTDSVWCKPICRTVSDAVYVLEAIVGFDPRDGVAIREASKFMPCGGYKQFSEKDGLKGKRIGIVAINRYLEEDLVESPVRSLADILAFNVNNPY PKLEKMEEFGEEFMAAAQMTNGIGKNKTEAIQFMDNLSQEGFEAVMKTHELDALVTIGSDVSSVLAIGGYPGISVLAGYGSEGKPFGIVFGGLKGTEPKL IEAAYSFEQATKERKPPPPHLSSSFPLNSKMHCSALSFRVKISMNYYALNTLTRGKVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10037668 [exp]	1.4	0.9181
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	3.2	0.9258
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	11.0	0.9173
AT1G79060			unknown protein		Lus10031795 [exp]	12.0	0.8981
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	14.5	0.8917
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	23.1	0.7768
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	28.0	0.7785
AT1G04150			C2 calcium/lipid-binding plant...		Lus10011271 [exp]	28.0	0.8842
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	31.4	0.8361
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	31.8	0.8947

Compare expression of checked genes

Lus10002804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.