Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 454 / 4e-158 Amidase family protein (.1) AT5G07360 95 / 9e-21 Amidase family protein (.1.2) AT3G25660 84 / 4e-17 Amidase family protein (.1) AT5G64440 82 / 1e-16 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 51 / 9e-07 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025066 [exp] 519 / 0 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10027852 [exp] 498 / 4e-174 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10027853 [exp] 478 / 7e-166 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10002804 [exp] 279 / 2e-88 AT4G34880 257 / 2e-90 Amidase family protein (.1) Lus10034477 [exp] 152 / 7e-42 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10027854 [exp] 135 / 3e-39 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10032519 [exp] 96 / 7e-21 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 93 / 6e-20 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10007361 [exp] 87 / 5e-18 AT3G25660 795 / 0.0 Amidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G171000 [exp] 635 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130700 [exp] 597 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G169400 [exp] 585 / 0 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.009G130500 [exp] 536 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171300 [exp] 523 / 0 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169300 [exp] 511 / 1e-179 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 489 / 2e-171 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.005G070300 [exp] 108 / 3e-25 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.015G109400 [exp] 102 / 3e-23 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.007G098600 [exp] 102 / 3e-23 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10002805 pacid=23158667 polypeptide=Lus10002805 locus=Lus10002805.g ID=Lus10002805.BGIv1.0 annot-version=v1.0 ATGGCTCGTGGCTCGAGGCCGGTCGGTGGGTTACATGGCATCCCGGTTTTGCTGAAGGATACCATTGGGACCAAGGACAAGCTGAACACCACAGCTGGCT CTTTCGCTCTGCTCGGTTCGGTTGTGGCTCAAGATGCCGGCGTGGTGAGCAAGTTAAGGAAGGCTGGTGCTATCATTTTGGGGAAGGCTAGTTTGAGTGA ATGGGCGGCTTTTAGGTCGCTTAAAGCTCCTAGTGGGTTTAGCCCCAGAGGCGGCCAAGGAAAGAACCCTTATGTATTGTCAGCTGATCCATGTGGGTCA AGCAGTGGGTCAGCAATATCAGTGGCGGCAAATCTAGTAGCAGTTTCAATTGGGACAGAAACTGATGGATCAATTCTATGCCCATCTCATTCCAATTCTG TTGTGGGCTTAAAGCCCACAGTTGGCCTCACTAGCAGATCTGGTGTTATTCCTGTCTCTCCCCGACAAGACACCATTGGGCCGATTTGTAGAACAGTATC CGATGCAGTCTACGTGCTCGACGCGATTGTTGGACTCGACGAGAACGACCCAACGACTCGAGAAGCATCGAAGTACATCCCTCGCAACGGGTACAAGCAA TTCCTCCAAAACCCAAGTGGGCTAAAAGGGTTGAGAGTTGGAGTGGTGAGGAAGCCATTCTTGAGCAATGTGGGTGAGTATGAAAGGCAAGCCTTTGAGA GCCATCTCAAGACATTGAAACAAAAAGGTGTGACTGTGATAGACAATTTGGAGATTTCGAACGTTGAGACCATCTTGAACTCAACTCAAAGTGGGGAAGC AATTGCACTGTTGGCTGAGTTCAAGATGGCCTTGAATGGATACTTGAAGCAGCTGGTTGCTTCTCCAGTCAGGACATTGGCTGATGTCATTGCTTTCAAT CAGAGGTTCTCAGATCTTAATAAGAATGAAGAGTTTGGGCAAGATATATTCCTGGCAGCTGAAGGGACAAATGGGATTGGCAGCCTAGAGAAGGCAGCAT TGGCAAACTTAGAACAACTAACAAAAGATGGGTTTGAGAAGTTGATGCTGGACAATCATTTGGATGGTTTGGTGACTCCTGGTCCTGGGATTTCACCAAT CCTTGCCATAGGAGGATTCCCTGGGATCAATGTTCCTGCTGGTTATGATGAGAAAGGTGTCCCCTTTGGGATTAGCTTTGGTGGGTTGAAAGGCACTGAG CCTAAGTTGATCAAATTGGCTTATGGGTTTGAGCAAGCTACCAGGATAAGGAAGCCTCCGACTTTTGTCGCTTGA
AA sequence Show only first row Show all	>Lus10002805 pacid=23158667 polypeptide=Lus10002805 locus=Lus10002805.g ID=Lus10002805.BGIv1.0 annot-version=v1.0 MARGSRPVGGLHGIPVLLKDTIGTKDKLNTTAGSFALLGSVVAQDAGVVSKLRKAGAIILGKASLSEWAAFRSLKAPSGFSPRGGQGKNPYVLSADPCGS SSGSAISVAANLVAVSIGTETDGSILCPSHSNSVVGLKPTVGLTSRSGVIPVSPRQDTIGPICRTVSDAVYVLDAIVGLDENDPTTREASKYIPRNGYKQ FLQNPSGLKGLRVGVVRKPFLSNVGEYERQAFESHLKTLKQKGVTVIDNLEISNVETILNSTQSGEAIALLAEFKMALNGYLKQLVASPVRTLADVIAFN QRFSDLNKNEEFGQDIFLAAEGTNGIGSLEKAALANLEQLTKDGFEKLMLDNHLDGLVTPGPGISPILAIGGFPGINVPAGYDEKGVPFGISFGGLKGTE PKLIKLAYGFEQATRIRKPPTFVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34880			Amidase family protein (.1)		Lus10002805 [exp]	0	1
AT1G60400			F-box/RNI-like superfamily pro...		Lus10038935 [exp]	1.4	0.9701
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10025675 [exp]	2.0	0.9701
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	7.1	0.8681
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	8.2	0.8681
					Lus10009177 [exp]	9.2	0.8681
					Lus10035026 [exp]	10.1	0.8681
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	10.9	0.8681
					Lus10001123 [exp]	11.7	0.8681
					Lus10023352 [exp]	12.4	0.8681
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	13.0	0.8681

Compare expression of checked genes

Lus10002805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.