Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49820 557 / 0 MTK1, ATMTK 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027858 [exp] 346 / 3e-120 AT1G49820 261 / 5e-87 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1) Lus10027857 [exp] 268 / 7e-90 AT1G49820 275 / 1e-92 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094800 [exp] 605 / 0 AT1G49820 686 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1) Potri.001G299700 [exp] 591 / 0 AT1G49820 653 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01636 [flax] [poplar] APH Phosphotransferase enzyme family
Representative CDS sequence Show only first row Show all	>Lus10002806 pacid=23158670 polypeptide=Lus10002806 locus=Lus10002806.g ID=Lus10002806.BGIv1.0 annot-version=v1.0 ATGGCGTCGTTCACTGAATTCAGGCCGCTGGACGAGAAATCGCTGATCGAATATATAACAGCAACCCCAGCTTTGTCGGAGAAGCTCGGGAACAACGTCG ATGAGATGAAGATCAAAGAAGTCGGAGATGGGAATTTGAATTTCGTCTACATCGTCACTTCCCCAGCTGGGTCGTTAGTCATTAAACAGGCACTTCCATA TGTACGTTGTATTGGAGAATCATGGCCGATGACAAAGGAAAGGGCATATTTCGAAGCAACCGTGCTTAAAGAACACGGTCGATTGTCTCCTGAACATGTT CCGGAACTCTATCATTTCGACCGTACAATGTCTTTGATCGGCATGAGGTACTTGGAACCTCCACATATAATCCTGCGTAAAGGACTTATCGCTGGAATCA AATTACATGGCCAACACTCTTTACTATACTTCCCTCATTCATCGCACCACCACCGAGCACAAACGAGCCGGCGAGCTCTCCAAGTCTCTGAGTATAACAA GTGGAATTCGCCTTACTTGGATCAAGACGTGGTGGCTGTTCGCGAGGATAATCAGTTGAAGCTTGAAATTGCTGAACTGAAAGCAAAGTTCTGTGAACGA GCTCAAGCGTTAGTCCATGGAGATCTTCACACTGGCTCTCTCATGGTTACACCTGAGTCCACTCAAGTCATAGATCCGGAATTCGGATTCTATGGTCCGA TGGGGTTCGACATTGGTGCATTCATCGGCAACTTGATCCTAGCTTACTATGCTCAAGATGGCCATGCCGATGCCAAAAATGACCGAAAAGCATACAAAGA GTGGATTTTGACGACAATCTACGACACATGGACCCTATTCGAGAAGAAATTCACTTCACTGTGGAACCATCATAAAGATGGCGAAGGAGAAGCTTATCTG CCAGAAATTTACAACAACCTTGAAGTTCAGCAGCTTGTGCAGAAGAAGTTCTTGACAGATTTGTTCCATGACAGCCTCGGCTTTGGTGCTGCCAAAATGA TCAGGAGGATTGTCGGAGTCGCTCATGTCGAGGATTTGGAATCCATTGAAGATGCTAGCATACGAGCAGACTGCGAGAGGCGAGCTCTAGATTTCGCGAA ATCGCTGCTCAAGGGAAGGCGTGAGTTCCGCTCCATCGCTGAAGTTGTGTCGGCCATTCAGCAGCCGCGATCGTGA
AA sequence Show only first row Show all	>Lus10002806 pacid=23158670 polypeptide=Lus10002806 locus=Lus10002806.g ID=Lus10002806.BGIv1.0 annot-version=v1.0 MASFTEFRPLDEKSLIEYITATPALSEKLGNNVDEMKIKEVGDGNLNFVYIVTSPAGSLVIKQALPYVRCIGESWPMTKERAYFEATVLKEHGRLSPEHV PELYHFDRTMSLIGMRYLEPPHIILRKGLIAGIKLHGQHSLLYFPHSSHHHRAQTSRRALQVSEYNKWNSPYLDQDVVAVREDNQLKLEIAELKAKFCER AQALVHGDLHTGSLMVTPESTQVIDPEFGFYGPMGFDIGAFIGNLILAYYAQDGHADAKNDRKAYKEWILTTIYDTWTLFEKKFTSLWNHHKDGEGEAYL PEIYNNLEVQQLVQKKFLTDLFHDSLGFGAAKMIRRIVGVAHVEDLESIEDASIRADCERRALDFAKSLLKGRREFRSIAEVVSAIQQPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10002806 [exp]	0	1
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027858 [exp]	1.7	0.9466
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	2.0	0.9376
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10036370 [exp]	3.9	0.9173
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	5.5	0.9033
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	14.5	0.9073
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	15.0	0.9001
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	21.0	0.8808
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	21.0	0.8969
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	25.5	0.8793
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	26.6	0.9023

Compare expression of checked genes

Lus10002806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.