Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57240 338 / 1e-115 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57270 331 / 8e-113 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 317 / 5e-107 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 310 / 2e-104 Glycosyl hydrolase superfamily protein (.1) AT5G56590 265 / 1e-84 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 231 / 6e-73 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 225 / 2e-69 O-Glycosyl hydrolases family 17 protein (.1) AT1G77780 218 / 3e-68 Glycosyl hydrolase superfamily protein (.1) AT2G05790 221 / 4e-68 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 221 / 5e-68 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027860 [exp] 512 / 0 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10019801 [exp] 401 / 2e-140 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 400 / 1e-139 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 399 / 3e-136 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027859 [exp] 342 / 1e-119 AT3G57240 185 / 4e-58 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014110 [exp] 325 / 6e-111 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 300 / 2e-100 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 293 / 6e-98 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10010091 [exp] 267 / 1e-83 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046100 [exp] 381 / 2e-132 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 370 / 3e-128 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 358 / 4e-123 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 350 / 6e-120 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G143166 [exp] 327 / 3e-111 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 326 / 7e-111 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 324 / 2e-109 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 290 / 4e-97 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 237 / 6e-77 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 238 / 6e-76 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10002807 pacid=23158665 polypeptide=Lus10002807 locus=Lus10002807.g ID=Lus10002807.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTAGAAACACTAGCCAGAGAATTAGCTCCAAGGTTCCGATGGCAGCAGCCATGTTCTTGGCTATGCTACTTGCTAGCATCGACTCTGCAG GTGCCCAAATTGGAGTGTGCTATGGGAGGCTAGGCGGGGACCTACCACGAGCCTCGGAGGTTGTGCAACTATACCGCCAGAACAACATCCGGAGGATGCG ACTGTACGACCCGAACCCAGAAGCCCTCCAGGCACTTAGGGGCTCCGGCATCGAGCTCATCTTGGACGTTCCTAACGACCAGCTCGGCAATGTGGCGTCT AGCCAAGCCAATGCTAATTCCTGGGTCCAGACCAACATTGCTGCTTATGGCAACGTTCAATTCAAGTACATCGCAGTTGGGAATGAGGTCGAACCAAACA GCCGGGAAGCTCCGGTTTTGGTCAGAGCTATTCAGAATATCCAAACCGCTATCAACTCGGCCGGTTTAGGAGGCCGGATGAAAGTCTCCACGTCCTTTAA GTTCAATATCATGGGCAATACATACCCGCCGGCCCAAGGCACTTTCAACCAAGCTTATATGGGCCTTCTGAGGCCCATATTGGACTTTTTAGTGGCCAAT CAATCCCCGGTGCTATTAAATTTGTACCCATTTTTCAGTCATCGTGATAATCCGAATTCTGTACCACTTAACTATGCCCTATTCAGAGGTCCGTCCGATC AGGGCACCGGGTATGAAAACCTTTTCTTTGCGATGTTGGATTCCACGTACTATGCCCTGGAACGAGAAGGAAAGGGGAGTCTGAACATCGTAGTGTCGGA GAGCGGGTGGCCGTCGGCAGGAGGAGGGGCTCCGACAACGGTGGATAATGCAAGGACTTACAACAACAATTTGGTACAACAGGTTAAAAGAGGGACACCA AAGCGTCCCGGTAGGCCAATTGAGACGTATATTTTTGCGATGTTTGACGAAGGGAACAAGGGCGGGGAACCGCTAGAGAAACATTTCGGGTTGTTTAGTC CTAATAGGCAGCCAAAGTATCCGATGCGGTTCGACTAA
AA sequence Show only first row Show all	>Lus10002807 pacid=23158665 polypeptide=Lus10002807 locus=Lus10002807.g ID=Lus10002807.BGIv1.0 annot-version=v1.0 MASPRNTSQRISSKVPMAAAMFLAMLLASIDSAGAQIGVCYGRLGGDLPRASEVVQLYRQNNIRRMRLYDPNPEALQALRGSGIELILDVPNDQLGNVAS SQANANSWVQTNIAAYGNVQFKYIAVGNEVEPNSREAPVLVRAIQNIQTAINSAGLGGRMKVSTSFKFNIMGNTYPPAQGTFNQAYMGLLRPILDFLVAN QSPVLLNLYPFFSHRDNPNSVPLNYALFRGPSDQGTGYENLFFAMLDSTYYALEREGKGSLNIVVSESGWPSAGGGAPTTVDNARTYNNNLVQQVKRGTP KRPGRPIETYIFAMFDEGNKGGEPLEKHFGLFSPNRQPKYPMRFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	2.0	0.7758
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	5.6	0.7826
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006925 [exp]	5.7	0.7032
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	6.9	0.7370
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	10.8	0.6953
AT2G36760		UGT73C2	UDP-glucosyl transferase 73C2 ...		Lus10014404 [exp]	11.0	0.6708
AT2G47540			Pollen Ole e 1 allergen and ex...		Lus10008213 [exp]	11.2	0.7061
AT5G51160			Ankyrin repeat family protein ...		Lus10034255 [exp]	16.6	0.7716
AT4G05030			Copper transport protein famil...		Lus10025179 [exp]	30.0	0.7003
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019684 [exp]	34.3	0.7232

Compare expression of checked genes

Lus10002807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.