Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15230 528 / 0 ATLIP1 lipase 1 (.1) AT5G14180 295 / 5e-95 MPL1 Myzus persicae-induced lipase 1 (.1) AT3G57270 102 / 2e-23 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 98 / 3e-22 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 95 / 4e-21 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 90 / 2e-19 Glycosyl hydrolase superfamily protein (.1) AT1G73920 81 / 6e-16 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G18460 80 / 1e-15 alpha/beta-Hydrolases superfamily protein (.1) AT2G26600 72 / 9e-14 Glycosyl hydrolase superfamily protein (.1.2) AT3G15800 71 / 4e-13 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027861 [exp] 645 / 0 AT2G15230 438 / 2e-152 lipase 1 (.1) Lus10002809 [exp] 556 / 0 AT2G15230 427 / 8e-151 lipase 1 (.1) Lus10015159 [exp] 311 / 2e-101 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10031523 [exp] 310 / 5e-101 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10038378 [exp] 307 / 2e-100 AT5G14180 377 / 2e-129 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 308 / 4e-100 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1) Lus10023171 [exp] 301 / 3e-97 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10015158 [exp] 293 / 2e-94 AT5G14180 351 / 2e-118 Myzus persicae-induced lipase 1 (.1) Lus10031524 [exp] 287 / 8e-92 AT5G14180 359 / 2e-121 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094900 [exp] 577 / 0 AT2G15230 564 / 0.0 lipase 1 (.1) Potri.014G159800 [exp] 329 / 2e-108 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 325 / 9e-107 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.014G159900 [exp] 320 / 9e-105 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.001G332300 [exp] 292 / 4e-94 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.017G069700 [exp] 240 / 2e-74 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1) Potri.016G057400 [exp] 115 / 2e-28 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 109 / 5e-26 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 105 / 1e-24 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 104 / 2e-24 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0028 [flax] [poplar] AB_hydrolase PF04083 [flax] [poplar] Abhydro_lipase Partial alpha/beta-hydrolase lipase region
Representative CDS sequence Show only first row Show all	>Lus10002808 pacid=23158647 polypeptide=Lus10002808 locus=Lus10002808.g ID=Lus10002808.BGIv1.0 annot-version=v1.0 ATGTTGGATGCTACATACTATGCTTTGGAAAGTGAAAGAAAGGGGAGTTTGAACATAGTTGTGTCGGAGAGCGGGCCTATGGAAGGAGGAGGGGATTCGA CCACCATGGATACTGCAAGGAGTTATAATAACAATTTGATTCAACATGTTAAAGGTGGGACACCGAAGCGGCCCGATGAACTAATTGAGATGTATATTTT CGCTATGTTTGACGAAGGGAATAAGGGTGGGGAACCGTTGGAGAAACATTTTGGACTGCTTGATCCTATGAAAAAGCAGCTAAAGTATCCAATGGGATTC GACAATCCAAAGATTCTTCTCCCAGAAAACCAGAGGAGCTCCAAGCTCATCGCGCCATTTCCAAAATTCCGCACGATGACGAAGCTGCTACTCTTCCTCC TCACATCGATCCTCCTGGTCACCGCATCCGCTGCCGCCGGCGACGAAGCGGTAACTCTCCAGCTGCGAACGCCGAAGGGTAACTTGTGCGGCCAAGTCAT CGGACGAGCTGGATACCCTTGCACCGAACACACTATTGAAACTACAGATGGATACTTGTTAGCTCTACAGAGGGTTTCCTCTAGGAATGGGAATATAAGC TCGATTCGTGGTCCTCCTGTCTTGCTTCAACATGGACTCTTCATGGGAGGCGATTGCTGGTTTCTGAATTCCCCCGAGGAGTCGCTAGGCTTCATCCTTG CAGACCAGGGTTTCGATGTATGGGTTGGAAATGCTCGCGGGACATTCTGGAGTCATGGGCATATATCTTTATCCGAGGACGACAAGGACTTCTGGGATTG GAGTTGGCAGGAACTGGCAATGTATGACCTGGCAGCGATGATACACCACATTTATTCAGCAACAAGCTCGAAAGTTTTCCTTGTTGGTCATTCTCAGGGA ACGATCATGTCTTTAGCGGCTCTCTCGCAGCCGAAAATTGTGGAAATGGTCGAAGCTGCTGCACTTCTGTGTCCAATTTCATACTTGGATCATGTAACTG CTCCTCTTGTACATAAAATGGTCACCATGCACGTTGATCAGATGGTTACTGCCATGGGCATACATCAACTGAACTTCAGAAGCGAGTTTCTGATCAACCT ATTGGATTCATTGTGTGAGGGGCTTCTACATTGCGACGACTTGTTGAGTTCAATAACAGGGGATAATTGCTGCTTCAACAGTTCACGAATCGACTTATAT CTCGACTACGAACCACACCCATCATCTGCGAAAAACCTGAGGCATCTTTTCCAGATGATTCGGAAGGGCACATTCGCGAAGTACGACTACGGGACGTTCA AAAACTTGAAGCAGTACGGGCAGGCATCTCCACCAGTGTTTGACCTGAGCCAGATACCAGACTCGTTGCCGCTGTGGATGGGGTACGGAGGTCTCGATGG GCTAGCTGACATCGACGACATGCAGCACACGCTTAAGGAGCTGCTGTGCAAGACGGAGCTGCTGTATCTGGAGAACTACGGTCACATCGACTTCCTTTTG AGCGTCAGAGGGAAAGAAGATGTTTATGACCATATTGTCGGATTTTTCCAATCACTTGGACAGTCTATAAGCAGTGCTTAA
AA sequence Show only first row Show all	>Lus10002808 pacid=23158647 polypeptide=Lus10002808 locus=Lus10002808.g ID=Lus10002808.BGIv1.0 annot-version=v1.0 MLDATYYALESERKGSLNIVVSESGPMEGGGDSTTMDTARSYNNNLIQHVKGGTPKRPDELIEMYIFAMFDEGNKGGEPLEKHFGLLDPMKKQLKYPMGF DNPKILLPENQRSSKLIAPFPKFRTMTKLLLFLLTSILLVTASAAAGDEAVTLQLRTPKGNLCGQVIGRAGYPCTEHTIETTDGYLLALQRVSSRNGNIS SIRGPPVLLQHGLFMGGDCWFLNSPEESLGFILADQGFDVWVGNARGTFWSHGHISLSEDDKDFWDWSWQELAMYDLAAMIHHIYSATSSKVFLVGHSQG TIMSLAALSQPKIVEMVEAAALLCPISYLDHVTAPLVHKMVTMHVDQMVTAMGIHQLNFRSEFLINLLDSLCEGLLHCDDLLSSITGDNCCFNSSRIDLY LDYEPHPSSAKNLRHLFQMIRKGTFAKYDYGTFKNLKQYGQASPPVFDLSQIPDSLPLWMGYGGLDGLADIDDMQHTLKELLCKTELLYLENYGHIDFLL SVRGKEDVYDHIVGFFQSLGQSISSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	0	1
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	1.0	0.9162
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	2.4	0.8939
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10027861 [exp]	3.0	0.8869
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	5.3	0.8696
AT2G46550			unknown protein		Lus10005973 [exp]	6.3	0.8550
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10020769 [exp]	6.5	0.8120
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	7.2	0.8214
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	7.7	0.8197
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022077 [exp]	8.1	0.8312
AT5G36250			Protein phosphatase 2C family ...		Lus10022588 [exp]	8.8	0.8059

Compare expression of checked genes

Lus10002808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.