Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19440 444 / 2e-153 Pseudouridine synthase family protein (.1) AT1G78910 295 / 5e-95 Pseudouridine synthase family protein (.1) AT1G76050 82 / 9e-17 Pseudouridine synthase family protein (.1.2) AT1G56345 64 / 5e-11 Pseudouridine synthase family protein (.1) AT3G52260 64 / 6e-11 Pseudouridine synthase family protein (.1.2.3) AT5G51140 59 / 2e-09 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027863 [exp] 802 / 0 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1) Lus10033350 [exp] 271 / 2e-85 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1) Lus10034804 [exp] 268 / 1e-84 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1) Lus10017250 [exp] 83 / 6e-17 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005619 [exp] 81 / 9e-16 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10022437 [exp] 65 / 5e-11 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10023503 [exp] 56 / 3e-08 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3) Lus10040385 [exp] 49 / 5e-06 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095700 [exp] 568 / 0 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.004G228200 [exp] 273 / 1e-86 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G016800 [exp] 85 / 1e-17 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.008G042000 [exp] 66 / 2e-11 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.013G009300 [exp] 54 / 1e-07 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1) Potri.015G101300 [exp] 52 / 4e-07 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10002811 pacid=23158655 polypeptide=Lus10002811 locus=Lus10002811.g ID=Lus10002811.BGIv1.0 annot-version=v1.0 ATGAAAGAGCTCAATCTCCTCCGCCGCTCACTCAGCCACCGCCGCCTCACAAATTCACATCAATCACTCCAATATCTCTACTCAACCACTGCCGAACAAT CTCCCTTCAAATCCCAACATCAAGACGGTCAAATCAACACTAGCAAAACCCCCAAATGGTTCACTCTCCCTCCGTTCACATCCACGGTGAACGGCTCCGC CGTTGGAAAAGCAATTTCCTCTTCCTCCGCCGCCGTCGACAACCACCCAACATCTGAAACCACCGCCCTGAAATGGGTCCTCCGCTCATGCCCTCAGCTC CCCAGGAGCCTCGTCCAGAAACTGTTCCGATTAAAACAGGTTAGGAGAGAATCAGCTCAGGAAGGAGATGTTAAACCTAAAAAGGTGACAGCTAAGGATT CAATGAATGTCGGAGATAAGATCTTACTCCCTGGTTCAGTAAATGTGGTTGCTTCCGAGAAGAAAGAGTGGCATTGCAGTGAAGAAGAAGTGGAGTTTAT CCGCAGCATTGTGCTGTACAAGGATCCAGCTATAATTGTTGTAAACAAGCCCCCCGGCCTGCCTGTTCAGGGTGGCATTGGGATCAAAAGAAGCTTGGAT GAACTGTCTGCAACTTGTTTACGTTATGACTCGTCAGATCCTCCTCGTTTGGTTCATAGACTTGACAGAGACAGCAGTGGAATATTGGTCATGGGAAGGA CGCAACCGAGCGCAACGTTTCTGCATTCGATTTTCCGGGAGAAAACTTTTGCTGCACCGGATAAGGACATAAAAAGAATCCTACAACGAAAATACTGGGC GCTTGTCATTGGATCGCCAAGGCGTTCGAATGGATTCATTTCAGCTCCACTTGGAAAGGTGGTGTTGGATGACGGGAAATCTGATCGAATAACAGTGATG GGTAACCCCGAAAACTCGTCCTCCCAGCATGCCATAACGCAGTACAAAGTGATCAAAACTTCTTCTGATGGCTACACTTGGTTAGAGCTATGCCCTCTCA CTGGTAGAAAGCATCAGATCAGGGTACATTGTGCTGAAATACTAGGAACACCATTAGTAGGGGACTACAAGTACGGTTGGCAAGCTCACAAGAACTTGAA GAAGCAGGAGGCGCATTCTCATCTCGAGATTAGCGAACCAAACCGAAAAGTTTGTGGCGAAAAGATGCTTCCTTTAGGGCTTGATTTAGAAAGTGGAAGC ATCCACGACAAAACGCCACGCTTGCATCTCCACTGCAAGCAAATGGTGCTACCTGACGTGTCACAGGCCCTGGATGACGTGGACAGAACCGGAGGCTTCG ATTTTTCGCAGGTGAAGAAGCTCAAATTCGATGCGCCTTTGCCTGCGTTCATGGAGAAGAGCTGGAACGCGTTGAGTTCCTGA
AA sequence Show only first row Show all	>Lus10002811 pacid=23158655 polypeptide=Lus10002811 locus=Lus10002811.g ID=Lus10002811.BGIv1.0 annot-version=v1.0 MKELNLLRRSLSHRRLTNSHQSLQYLYSTTAEQSPFKSQHQDGQINTSKTPKWFTLPPFTSTVNGSAVGKAISSSSAAVDNHPTSETTALKWVLRSCPQL PRSLVQKLFRLKQVRRESAQEGDVKPKKVTAKDSMNVGDKILLPGSVNVVASEKKEWHCSEEEVEFIRSIVLYKDPAIIVVNKPPGLPVQGGIGIKRSLD ELSATCLRYDSSDPPRLVHRLDRDSSGILVMGRTQPSATFLHSIFREKTFAAPDKDIKRILQRKYWALVIGSPRRSNGFISAPLGKVVLDDGKSDRITVM GNPENSSSQHAITQYKVIKTSSDGYTWLELCPLTGRKHQIRVHCAEILGTPLVGDYKYGWQAHKNLKKQEAHSHLEISEPNRKVCGEKMLPLGLDLESGS IHDKTPRLHLHCKQMVLPDVSQALDDVDRTGGFDFSQVKKLKFDAPLPAFMEKSWNALSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	0	1
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	2.8	0.8185
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10008853 [exp]	5.3	0.8400
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10003287 [exp]	7.7	0.8016
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	9.3	0.7612
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	11.1	0.7171
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	11.3	0.8374
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	11.7	0.8213
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	14.9	0.7719
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	15.6	0.7351
AT3G22430			unknown protein		Lus10006278 [exp]	15.7	0.7615

Compare expression of checked genes

Lus10002811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.