Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34230 496 / 3e-177 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT3G19450 476 / 2e-169 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G39330 336 / 4e-114 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21890 332 / 3e-112 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 327 / 2e-110 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G37970 311 / 2e-104 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37990 291 / 1e-96 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 279 / 8e-92 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT1G72680 258 / 1e-83 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT5G51970 55 / 4e-08 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027864 [exp] 657 / 0 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10019811 [exp] 592 / 0 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 590 / 0 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002089 [exp] 321 / 4e-108 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 318 / 3e-107 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 315 / 4e-106 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 310 / 6e-104 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10017285 [exp] 291 / 2e-96 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 288 / 3e-95 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095800 [exp] 532 / 0 AT3G19450 476 / 3e-169 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G307200 [exp] 340 / 7e-116 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 333 / 7e-113 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.016G065300 [exp] 328 / 7e-111 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.001G268600 [exp] 326 / 2e-110 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 324 / 3e-109 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 316 / 3e-106 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.002G018300 [exp] 288 / 2e-95 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 283 / 2e-93 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.011G148100 [exp] 279 / 6e-92 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10002812 pacid=23158661 polypeptide=Lus10002812 locus=Lus10002812.g ID=Lus10002812.BGIv1.0 annot-version=v1.0 ATGGGTAGCATCGGAAAGGAGAGAACCATCGTCGGCTGGGCCGCCACCGATCCTTCCGGCGTCCTCACTCCTCACACCTTCACTCTCAGGAACACCGGCC CTGAAGATGTGTTCATCAGAGTGAAGTGCTGCGGAATCTGCCATAGCGACATCCACCAGGTGAAGAACGACCTTGGGATGTCTCGTTACCCCATGGTTCC TGGACATGAAGTGGTGGGGGAGGTGATGGAGGTGGGATCGGAGGTGACGAAGTATAAAGCAGGGGACATCGTCGGAGTCGGGCTCCTCGTCGGATGCTGC CGGAGCTGCCGGGCTTGCGAATCCGACATCGAGCAGTACTGCAACAAGAAGATCTGGTCGTACAACGACGTGTACACCGATGGGAAGCCCACGCAAGGCG GGTTTGCAGAGTCCATGGTCGTTGATCAGAAATTTGTGGTGAAGATCCCGGAAGGGATGTCCCCGGAGCAGGCTGCACCCCTGTTATGCGCAGGGGTGAC GGTTTACAGCCCGCTGATCCATTTCGGGCTGAACCAAACCGGATTGAGAGGCGGCATCTTGGGGCTTGGTGGAGTTGGCCACATGGGTGTTAAGATTGCT AAGGCAATGGGTCACCACATAACTGTGATAAGCTCTTCTGATAAGAAGAGAGTTGAGGCATTGGAGCATTTGGGAGCTGATGACTATCTGGTTAGCTCTG ATAAGGAAAAGATGGAAGAGGCTGCCGATTCGCTCGATTACATCATTGATACCGTACCGGTTAACCACCCGCTCGAGCCGTACCTTTCGCTGTTGAAGGT TGATGGGAAGTTGATCTTGATGGGTGTTATCAACACACCTTTGCAGTTTATCAGCCCCATGGTCATGCTTGGGAGGAAGGCGATAACAGGGAGTTTCGTG GGGAGCATGAAGGAAATGGAGGAGATGCTGGAGTTCTGCAGGGAGAAAGGGTTGAGCTCCATGATAGAGGTGATCAAGATGGACTACATCAACACGGCAT TCGAGAGGCTGGAGAAGAACGATGTTCGTTACAGGTTCGTGGTCGATATCGAGGGGAGCGACAAGCTTGTTCAGCAACAATAA
AA sequence Show only first row Show all	>Lus10002812 pacid=23158661 polypeptide=Lus10002812 locus=Lus10002812.g ID=Lus10002812.BGIv1.0 annot-version=v1.0 MGSIGKERTIVGWAATDPSGVLTPHTFTLRNTGPEDVFIRVKCCGICHSDIHQVKNDLGMSRYPMVPGHEVVGEVMEVGSEVTKYKAGDIVGVGLLVGCC RSCRACESDIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLIHFGLNQTGLRGGILGLGGVGHMGVKIA KAMGHHITVISSSDKKRVEALEHLGADDYLVSSDKEKMEEAADSLDYIIDTVPVNHPLEPYLSLLKVDGKLILMGVINTPLQFISPMVMLGRKAITGSFV GSMKEMEEMLEFCREKGLSSMIEVIKMDYINTAFERLEKNDVRYRFVVDIEGSDKLVQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10002812 [exp]	0	1
AT2G43630			unknown protein		Lus10013892 [exp]	2.4	0.9076
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	4.6	0.9127
AT1G23390			Kelch repeat-containing F-box ...		Lus10029127 [exp]	6.6	0.9019
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	7.6	0.9346
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	11.4	0.9197
AT2G28410			unknown protein		Lus10021476 [exp]	11.7	0.9091
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	14.5	0.9082
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	21.0	0.8785
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10042223 [exp]	21.6	0.8801
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	21.9	0.8901

Compare expression of checked genes

Lus10002812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.