Plant FIBer expression Database

Lus10002813 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15240 263 / 1e-89 UNC-50 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027865
[exp]
102 / 2e-06 AT2G15240 215 / 7e-71 UNC-50 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G095900
[exp]
278 / 1e-95 AT2G15240 379 / 2e-134 UNC-50 family protein (.1)
Potri.001G300100
[exp]
244 / 3e-82 AT2G15240 342 / 5e-120 UNC-50 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05216 UNC-50 UNC-50 family
Representative CDS sequence
>Lus10002813 pacid=23158659 polypeptide=Lus10002813 locus=Lus10002813.g ID=Lus10002813.BGIv1.0 annot-version=v1.0
ATGTGGCTTCGGTGTGATGGATGCAGCTATCAGCACACTAAGTATCATAAACAAACTAAGAATCAATGGGCACGTGATGATCCTGCTTTTGTTGTAATCT
GCAGTCTTCTTCTGGCCGTTGCGACTTTGGCTTATTGTGCTGCGTATGATCACAGGGCCTCTCACACTGTTTTTGTAGTTTTATCAGTACTCTTTTTCCA
CTTCTTATTTTCCGGGGTGCTTCTGGCTACAGCTTGTTGGTTGTACGCTTTTGATGTGCACTGCAATTCTTTCTTCCCGATGTTCGTTATGCTCTATGTT
GTACATTATTTTCTATCACCGCTACTGGTGGCCCATGGTTTCATACCGGTGCTACTCTCGAACCTGCTATTCATGGTGGCAGCATCGTATTATCATTACC
TCAACTTCTTAGGTTATGACGTCCTACCATTCCTCGAGAGAACAACCTTTTTCCTCTATCCAATCGGCATCGTCATTGTCCTCTCTCCCATCTTTATATT
GAGTGGATTCAGCCCTTCAAGATACTTCATGAACATGTACTTCAGTCAATGGTCGTTGTAA
AA sequence
>Lus10002813 pacid=23158659 polypeptide=Lus10002813 locus=Lus10002813.g ID=Lus10002813.BGIv1.0 annot-version=v1.0
MWLRCDGCSYQHTKYHKQTKNQWARDDPAFVVICSLLLAVATLAYCAAYDHRASHTVFVVLSVLFFHFLFSGVLLATACWLYAFDVHCNSFFPMFVMLYV
VHYFLSPLLVAHGFIPVLLSNLLFMVAASYYHYLNFLGYDVLPFLERTTFFLYPIGIVIVLSPIFILSGFSPSRYFMNMYFSQWSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15240 UNC-50 family protein (.1) Lus10002813
[exp]
0 1
AT3G48750 CDKA1, CDC2A, C... cell division control 2 (.1) Lus10038754
[exp]
3.2 0.8412
AT2G36570 Leucine-rich repeat protein ki... Lus10017178
[exp]
17.0 0.8018
AT2G47500 P-loop nucleoside triphosphate... Lus10010300
[exp]
23.6 0.8016
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Lus10027476
[exp]
23.8 0.8133
AT5G19130 GPI transamidase component fam... Lus10014561
[exp]
32.7 0.7810
AT4G23740 Leucine-rich repeat protein ki... Lus10032351
[exp]
37.1 0.7834
AT1G74690 IQD31 IQ-domain 31 (.1) Lus10004263
[exp]
37.5 0.7802
AT2G45590 Protein kinase superfamily pro... Lus10041395
[exp]
38.9 0.7707
AT4G35020 ROP6, ARAC3, RH... RHO-RELATED PROTEIN FROM PLANT... Lus10002181
[exp]
39.4 0.7992
AT2G13690 PRLI-interacting factor, putat... Lus10020892
[exp]
43.8 0.7516

Lus10002813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.