Plant FIBer expression Database

Lus10002814 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15270 76 / 2e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027866
[exp]
128 / 2e-37 AT2G15270 139 / 9e-42 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G300300
[exp]
86 / 3e-21 AT2G15270 96 / 5e-25 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06658 DUF1168 Protein of unknown function (DUF1168)
Representative CDS sequence
>Lus10002814 pacid=23158673 polypeptide=Lus10002814 locus=Lus10002814.g ID=Lus10002814.BGIv1.0 annot-version=v1.0
ATGTCGACGGGCAAGACCAAGGACGGGGACTTGCAGATAGTACCGGTGACGGTGGCGGCAGATAATCCGAGGCCTCCAGCAGTTCCGCCGCTCCCGCTCA
AGGTTTCGGCCGCGTCGACGGGATCCTCTGCGCTGGTCGAGTATAAAGGGCCGGTGTTCAAGGAAGAGGAGGAGGATTTGGAGCTGAAGCTTCGGCGGAT
CCTTGAGAATGTACCTGTTCGAGTCAGCAATACTTCCGGAAGTTCCGCTGGTGCCGGCTCCGGTGACTTTCACCAGTATAGGCAAATGAGGCGGAAAGAG
CAAGACCGGGTTAAGAGGATGGAAGACGACTACCAGAAAAGGAAAGAAGCTGCAGAGTTCGAGATGAGAAGGGAGGAAAGGCTGAAAGCCGCTGAGGAGC
GAACATCAAAGAAGCGCACAAAACGGCAGAGGAAGAAGCAGAAGAAAAAGCAGAAGAAGACGGTGACTTTGACCCAAGAATGTGCTGCTGCAAATACTGG
AGAAGATCGCTCGAAGGAAGATGAATCTTCAGACGACGAAGAGGGGTCTGATTAA
AA sequence
>Lus10002814 pacid=23158673 polypeptide=Lus10002814 locus=Lus10002814.g ID=Lus10002814.BGIv1.0 annot-version=v1.0
MSTGKTKDGDLQIVPVTVAADNPRPPAVPPLPLKVSAASTGSSALVEYKGPVFKEEEEDLELKLRRILENVPVRVSNTSGSSAGAGSGDFHQYRQMRRKE
QDRVKRMEDDYQKRKEAAEFEMRREERLKAAEERTSKKRTKRQRKKQKKKQKKTVTLTQECAAANTGEDRSKEDESSDDEEGSD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15270 unknown protein Lus10002814
[exp]
0 1
AT1G20580 Small nuclear ribonucleoprotei... Lus10016013
[exp]
5.7 0.8879
AT5G40490 RNA-binding (RRM/RBD/RNP motif... Lus10014562
[exp]
6.0 0.9183
AT1G27435 unknown protein Lus10032003
[exp]
6.7 0.8909
AT4G39520 GTP-binding protein-related (.... Lus10005800
[exp]
11.5 0.9182
AT1G32580 plastid developmental protein ... Lus10011789
[exp]
12.0 0.9047
AT2G02050 NADH-ubiquinone oxidoreductase... Lus10019137
[exp]
13.0 0.9047
AT2G28720 Histone superfamily protein (.... Lus10028826
[exp]
13.4 0.8926
AT5G53800 unknown protein Lus10014800
[exp]
14.7 0.8967
AT2G40060 CLC2 clathrin light chain 2, Clathr... Lus10030401
[exp]
15.1 0.8683
AT5G55140 ribosomal protein L30 family p... Lus10004595
[exp]
16.1 0.9076

Lus10002814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.