Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19460 176 / 6e-56 Reticulon family protein (.1.2) AT2G15280 149 / 4e-45 Reticulon family protein (.1.2) AT3G10915 110 / 6e-30 Reticulon family protein (.1.2.3.4.5.6) AT3G61560 98 / 7e-25 Reticulon family protein (.1.2) AT1G64090 98 / 8e-25 RTNLB3 Reticulan like protein B3 (.1.2) AT2G46170 97 / 2e-24 Reticulon family protein (.1.2) AT5G41600 95 / 1e-23 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G23630 94 / 3e-23 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT3G54120 93 / 3e-23 Reticulon family protein (.1) AT3G10260 93 / 4e-23 Reticulon family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027867 [exp] 341 / 3e-120 AT3G19460 184 / 1e-58 Reticulon family protein (.1.2) Lus10019812 [exp] 253 / 6e-86 AT3G19460 208 / 1e-68 Reticulon family protein (.1.2) Lus10014102 [exp] 232 / 1e-77 AT3G19460 209 / 5e-69 Reticulon family protein (.1.2) Lus10034224 [exp] 114 / 4e-31 AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6) Lus10032451 [exp] 112 / 1e-30 AT3G18260 268 / 9e-92 Reticulon family protein (.1) Lus10035537 [exp] 97 / 8e-25 AT3G54120 185 / 2e-59 Reticulon family protein (.1) Lus10027756 [exp] 96 / 2e-24 AT3G54120 181 / 1e-57 Reticulon family protein (.1) Lus10029822 [exp] 97 / 3e-24 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Lus10038833 [exp] 96 / 4e-24 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300400 [exp] 209 / 1e-68 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.009G096200 [exp] 183 / 2e-58 AT2G15280 132 / 1e-38 Reticulon family protein (.1.2) Potri.019G057400 [exp] 121 / 7e-34 AT3G10915 260 / 6e-88 Reticulon family protein (.1.2.3.4.5.6) Potri.016G110200 [exp] 116 / 2e-32 AT3G54120 193 / 1e-62 Reticulon family protein (.1) Potri.014G091200 [exp] 106 / 3e-28 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.012G035600 [exp] 99 / 4e-25 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 97 / 2e-24 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.005G206800 [exp] 94 / 4e-23 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.015G044300 [exp] 92 / 7e-23 AT3G18260 251 / 1e-84 Reticulon family protein (.1) Potri.001G097700 [exp] 93 / 8e-23 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10002815 pacid=23158650 polypeptide=Lus10002815 locus=Lus10002815.g ID=Lus10002815.BGIv1.0 annot-version=v1.0 ATGGGAGACACCGTGGATCCTCCTCCTCCTCCACCTCATCGCACCACCGTCCACGAGATGCTCGGCGGCGGCTCAGTTGCTGATGCTCTTCTATGGCGGA GATGGGGGAAAAGCGTGAAGTTGTTAATCTTCTCGACGACGTCGTGGTACCTGTTCGAGCGAGCAGGATACAATCTGATGACGTTCGTCGCGAACGTGTT GTTCTCGCTCGTCGTTATCCTCTTCCTCTGGGCGAAATCTGCTTCTCTTCTCAATCGGCCGCTACCCCCGAATCCCCCACCTCACAAAAAAAAAAAAGAA ATAACTGAGGAGACTGTGGATAAGATTGTGCATGTTGCTCAAGGCTATGTCAACAATGTGTTGGCTATTGGATGTGACATTGCAGTTGAGAGGAACTTGA AGGTTTTCCTACAGGTTTCATTCGTCACGTGGCTCGTTTCATACGTTGGTAGCCTCTTCAGTTTCCTTACTTTTGTATACGTTGGGGTACTTCTTAGTCT TTCTATTCCGGTGCTATATGAAAGATTCCAGCACCGGATTGATGAGAATCTGCTCGTGTTACGGAGAATACTCGACTCTCAGTTTAGAAACCTTCTGAAG AAGATTCCAGCACCATCACGTAAGGAGAAGAAGGTCCAATAG
AA sequence Show only first row Show all	>Lus10002815 pacid=23158650 polypeptide=Lus10002815 locus=Lus10002815.g ID=Lus10002815.BGIv1.0 annot-version=v1.0 MGDTVDPPPPPPHRTTVHEMLGGGSVADALLWRRWGKSVKLLIFSTTSWYLFERAGYNLMTFVANVLFSLVVILFLWAKSASLLNRPLPPNPPPHKKKKE ITEETVDKIVHVAQGYVNNVLAIGCDIAVERNLKVFLQVSFVTWLVSYVGSLFSFLTFVYVGVLLSLSIPVLYERFQHRIDENLLVLRRILDSQFRNLLK KIPAPSRKEKKVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	0	1
AT3G19460			Reticulon family protein (.1.2...		Lus10027867 [exp]	1.0	0.9326
AT4G19670			RING/U-box superfamily protein...		Lus10040616 [exp]	2.4	0.9298
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	7.3	0.9159
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10006399 [exp]	8.4	0.9128
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	11.2	0.8886
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	11.7	0.9115
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	14.0	0.9178
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	14.1	0.9083
AT1G17270			O-fucosyltransferase family pr...		Lus10037461 [exp]	15.6	0.9241
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	16.7	0.9242

Compare expression of checked genes

Lus10002815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.