Plant FIBer expression Database

Lus10002816 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01640 122 / 6e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027869
[exp]
205 / 2e-68 AT2G01640 149 / 1e-46 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G097000
[exp]
140 / 5e-43 AT2G01640 133 / 3e-40 unknown protein
PFAM info
Representative CDS sequence
>Lus10002816 pacid=23158675 polypeptide=Lus10002816 locus=Lus10002816.g ID=Lus10002816.BGIv1.0 annot-version=v1.0
ATGTTTCTCCTCCAGTTGATTCGGTTTCTCGTGAAAAAACTTTGCAGGAAAGATGCCAACGCCAAAATAGAGCGCAAGTTCGAGAAGAAGGTCGAGTTTT
ACTCCAAGGTTAAGGATTCGGTTTCTCTGAATGCCACCAAGTCTATCACCAAGAAGAAGAAACTACGAAGCCGACAGAAGAAGCTGAAAGCATACGACCT
TACCACACTTTCGGAGTTCCTTCCTGATGTGAATGCTCCGAAACAAAAGGCATTAACTGTAAAGGAGTTCAAGCTGAACTGCAAGTCAAGGAAGAAGATA
CTGGAGATGGAATCGAAACAAATGAATACCATTCTCAACCATCCTGCATTCCTGTCTGATCCTTTGGGATCCATTCACCAGCATCTACAGAGCACTCAGC
CTCCGGTGGAAGAAAAGCCAAGGAAGAAGGGGAACAAGAACGGCAAGAAGAAATCGAAGAGTAAAAAGCCGAAAGCATCATCATCATCGTCTGGCACTGA
ACTGATGGAGAGCTGA
AA sequence
>Lus10002816 pacid=23158675 polypeptide=Lus10002816 locus=Lus10002816.g ID=Lus10002816.BGIv1.0 annot-version=v1.0
MFLLQLIRFLVKKLCRKDANAKIERKFEKKVEFYSKVKDSVSLNATKSITKKKKLRSRQKKLKAYDLTTLSEFLPDVNAPKQKALTVKEFKLNCKSRKKI
LEMESKQMNTILNHPAFLSDPLGSIHQHLQSTQPPVEEKPRKKGNKNGKKKSKSKKPKASSSSSGTELMES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G01640 unknown protein Lus10002816
[exp]
0 1
AT2G33370 Ribosomal protein L14p/L23e fa... Lus10023730
[exp]
5.8 0.8965
AT3G11500 Small nuclear ribonucleoprotei... Lus10017019
[exp]
6.2 0.8924
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Lus10012051
[exp]
6.9 0.8089
AT1G61700 RNA polymerases N / 8 kDa subu... Lus10008095
[exp]
7.1 0.8573
AT5G56670 Ribosomal protein S30 family p... Lus10017473
[exp]
10.2 0.8712
AT3G18760 Translation elongation factor... Lus10006729
[exp]
11.8 0.8625
AT3G19650 cyclin-related (.1) Lus10002122
[exp]
12.7 0.8258
AT1G26660 Prefoldin chaperone subunit fa... Lus10030428
[exp]
13.0 0.8021
AT3G08000 RNA-binding (RRM/RBD/RNP motif... Lus10031534
[exp]
13.9 0.8279
AT4G29430 RPS15AE ribosomal protein S15A E (.1) Lus10000975
[exp]
17.4 0.8707

Lus10002816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.