Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15310 273 / 1e-94 ATARFB1A ADP-ribosylation factor B1A (.1) AT1G10630 266 / 3e-92 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 265 / 1e-91 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 265 / 1e-91 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G70490 264 / 2e-91 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 264 / 2e-91 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT3G62290 264 / 3e-91 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT5G17060 214 / 2e-71 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 212 / 1e-70 ATARFB1C ADP-ribosylation factor B1C (.1) AT2G24765 196 / 3e-64 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027870 [exp] 326 / 8e-116 AT1G10630 241 / 2e-82 ADP-ribosylation factor A1F (.1) Lus10030884 [exp] 265 / 2e-91 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 265 / 4e-91 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 263 / 8e-91 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 266 / 9e-91 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 266 / 4e-88 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 265 / 5e-83 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10013020 [exp] 225 / 3e-73 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10009571 [exp] 215 / 9e-72 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142100 [exp] 280 / 2e-97 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.001G301200 [exp] 271 / 6e-94 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3) Potri.010G152600 [exp] 267 / 2e-92 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 266 / 4e-92 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 266 / 4e-92 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 266 / 4e-92 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.008G100000 [exp] 266 / 5e-92 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 265 / 1e-91 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 265 / 1e-91 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 265 / 1e-91 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10002817 pacid=23158663 polypeptide=Lus10002817 locus=Lus10002817.g ID=Lus10002817.BGIv1.0 annot-version=v1.0 ATGGGGACGATGATCTCAAGGATTGCCAAGCTGTTTTTCCCCAAGAGTCGAGTCAGGATTCTGATGATCGGGCTCGACGGTTCCGGGAAAACCACGATTC TCTACAAGTTGAAGCTCGGCGAAACTGTTACAACCACACCCACAATCGGTTTCAACGTCGAGACCGTGCAGTACAAGAATGTTAGCTTTTCGGTATGGGA CGTAGGAGGGCAGCATAAGATTCGGGGTTTGTGGAGGCATTACTTCCACAATGTCGAGGGGCTGGTGTTCGTTGTGGACAGCAACGACAGGGAGAGAATC GCGGAAGCTCGAAACGAGGTCCACCGGGTTCTATCTGATGTTGAGCTGAGGGATTCCGCTCTGTTGGTTTTCGCCAACAAGCAGGACTTCCAGGATGCAA TGACTGCTTCCGAGATTGCTCATAAGCTCGGCCTCCATTCTCTCGGCCATCGTCAGTGGTTTGTGCAGTGTTCTTCTGCTACATCTGGGGAAGGCCTGTA CGAAGGCCTAAACTGGCTCTCGACAATTATTTCGAGTAAGCCGGTATAA
AA sequence Show only first row Show all	>Lus10002817 pacid=23158663 polypeptide=Lus10002817 locus=Lus10002817.g ID=Lus10002817.BGIv1.0 annot-version=v1.0 MGTMISRIAKLFFPKSRVRILMIGLDGSGKTTILYKLKLGETVTTTPTIGFNVETVQYKNVSFSVWDVGGQHKIRGLWRHYFHNVEGLVFVVDSNDRERI AEARNEVHRVLSDVELRDSALLVFANKQDFQDAMTASEIAHKLGLHSLGHRQWFVQCSSATSGEGLYEGLNWLSTIISSKPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15310		ATARFB1A	ADP-ribosylation factor B1A (....		Lus10002817 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	2.0	0.9176
AT5G19875			unknown protein		Lus10034527 [exp]	3.9	0.9035
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	7.7	0.9131
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	8.5	0.9125
AT3G44716			unknown protein		Lus10020554 [exp]	9.8	0.8868
AT5G08391			Protein of unknown function (D...		Lus10032032 [exp]	13.2	0.8689
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	14.0	0.9092
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10017204 [exp]	15.8	0.8873
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10009472 [exp]	18.3	0.8489
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	19.7	0.8954

Compare expression of checked genes

Lus10002817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.