Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) AT3G26922 73 / 3e-14 F-box/RNI-like superfamily protein (.1) AT1G32375 72 / 1e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52680 70 / 6e-13 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G26340 69 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56440 69 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 69 / 2e-12 F-box/RNI-like superfamily protein (.1) AT3G18150 67 / 4e-12 RNI-like superfamily protein (.1) AT4G00160 66 / 1e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56810 65 / 3e-11 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001507 [exp] 257 / 4e-83 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 226 / 3e-71 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 221 / 3e-69 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002820 [exp] 206 / 1e-63 AT3G58930 72 / 1e-13 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 198 / 3e-60 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 185 / 8e-55 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 181 / 2e-53 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10024695 [exp] 176 / 5e-52 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 172 / 1e-50 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 126 / 3e-33 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 102 / 2e-24 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 97 / 2e-22 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 96 / 6e-22 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 95 / 9e-22 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 62 / 1e-10 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 60 / 4e-10 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G322900 [exp] 53 / 2e-07 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 53 / 2e-07 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 53 / 2e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10002819 pacid=23158677 polypeptide=Lus10002819 locus=Lus10002819.g ID=Lus10002819.BGIv1.0 annot-version=v1.0 ATGTATCGTCGAAGCCAGCTATACATAGATGCGAAAAGGCGAGCCCGAAAAGGAGACCTGTCTCGTACCGACAGGTTAAGCAATCTTCCAGACTCGGTTC TTTATCGCATACTTTCGCTACTCGACACCAAATCCGTCGTTCAGACCTGTGTACTGTCCCGACAATGGAGATGCGTCTGGAAACATGTCCCTGCCTTCGA ATTGGATATCTCGTCCTTTGATTCCCACTACGAGGGATTCAATTCGTCCTTGGACAAGGTTTTCTCACTCCACTATCCCACCGATATCGACAAGATCAGC TGCTATCCCACCGATTCTGTCTTGAAGGTTTTCGAATATGCTGCCTCCCACCGGACTCGACACTTAGTCCTGCAACTGAGGTCACAAGAAGATGCTTATG CTCGCTATAGGTTCCCTCAGTCTCATGACATCATCTCCGACTGCAATCTCGAAAGTCTAGAGCTATCTGGTTTCGCAATCGACGACCAGTTTGCATCTTT CGGTTTTCTTCGCTCGCTGACAACTTTGAAACTGGTCTCTTGTGTATTCGAGTCCGACGATCCTTTCTCTAAATTACCCTGTTTGAAGAGCTTGTCTATC GATGGTCGTGGTGCCCGATATTCTTTCGGTAAGAGGTTGAGAATTGATGGGGTACAGTTACATAGCCTGAAGCTGGAGCGTATGGATTTCTGCAATGTCG AAATTACATGTGCGCCCAAACTCAAATCCTTGGCGCTTGTGGATGATGAGATACCGGAGCAGGTGTCACAACTAGCGTTATCTTCTCTTGATCATGCTGA TGTTAGAATCAGTGACAACTTCACCAAGGAGAATGCGCTCCTCATGCTCCGACCTTTCCGTAATGTAAAATCTTTGACTCTAGGCCGTCAAGTCATCAAG GTACTCTGCGAGGATTTCGAGTTTCTGGAGCGACAACCGTCTGGGTTTACGAGATTGGAGAAATTGAATTTGAAGTTGCCGATGAATAGCTACATACCTA CAAGGTTGTTGATGTACTTTCTTCGAAGTTCCTCTTATGCATCTGCCAAGTTCAAGATTGTGTAA
AA sequence Show only first row Show all	>Lus10002819 pacid=23158677 polypeptide=Lus10002819 locus=Lus10002819.g ID=Lus10002819.BGIv1.0 annot-version=v1.0 MYRRSQLYIDAKRRARKGDLSRTDRLSNLPDSVLYRILSLLDTKSVVQTCVLSRQWRCVWKHVPAFELDISSFDSHYEGFNSSLDKVFSLHYPTDIDKIS CYPTDSVLKVFEYAASHRTRHLVLQLRSQEDAYARYRFPQSHDIISDCNLESLELSGFAIDDQFASFGFLRSLTTLKLVSCVFESDDPFSKLPCLKSLSI DGRGARYSFGKRLRIDGVQLHSLKLERMDFCNVEITCAPKLKSLALVDDEIPEQVSQLALSSLDHADVRISDNFTKENALLMLRPFRNVKSLTLGRQVIK VLCEDFEFLERQPSGFTRLEKLNLKLPMNSYIPTRLLMYFLRSSSYASAKFKIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02910			F-box/RNI-like superfamily pro...		Lus10002819 [exp]	0	1
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014057 [exp]	7.4	0.7705
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	12.8	0.7376
					Lus10014248 [exp]	15.7	0.7201
AT3G26950			unknown protein		Lus10032011 [exp]	20.1	0.7082
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	22.1	0.7196
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10037092 [exp]	23.4	0.6759
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10011977 [exp]	25.7	0.6971
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10026121 [exp]	28.0	0.6900
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008404 [exp]	29.0	0.5726
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	30.2	0.6961

Compare expression of checked genes

Lus10002819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.