Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58930 72 / 1e-13 F-box/RNI-like superfamily protein (.1) AT1G78750 69 / 1e-12 F-box/RNI-like superfamily protein (.1) AT4G15060 69 / 2e-12 unknown protein AT4G10400 67 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G00160 67 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G50710 64 / 5e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G58860 62 / 2e-10 F-box/RNI-like superfamily protein (.1) AT1G32375 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 61 / 5e-10 F-box/RNI-like superfamily protein (.1) AT5G56440 61 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002819 [exp] 206 / 2e-63 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) Lus10001507 [exp] 195 / 3e-59 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002239 [exp] 159 / 2e-45 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10042477 [exp] 156 / 2e-44 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 155 / 6e-44 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 154 / 1e-43 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10032432 [exp] 155 / 2e-43 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 141 / 3e-39 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 141 / 8e-39 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 100 / 9e-24 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 100 / 1e-23 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 93 / 5e-21 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 86 / 1e-18 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 85 / 3e-18 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 85 / 3e-18 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 57 / 9e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024300 [exp] 57 / 9e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 56 / 9e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G395000 [exp] 56 / 2e-08 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10002820 pacid=23158654 polypeptide=Lus10002820 locus=Lus10002820.g ID=Lus10002820.BGIv1.0 annot-version=v1.0 ATGGACAACCAACGTGGCAACCCTTCTGGTTCTACCGACAGGTTAAGCAATCTTCCGGACCCCATCATTCATCATATACTTTCCTTCGTCAGCACAAAAA CGGTCGTTCAGACCTCTGTATTGTCTCGAAAGTGGGTATGTGTTTGGAAAGATGTCCCTGCTCTTGAATTCAATTTCAGTGACTTTGCATCCGGCATTGG TTCTATTGAGAACCCCTATAACTTTGGGAGATTTAACAAGTTTGTGGAAATGGTATTGTCGCTCCACAATGACACCGGTTTTGAGAGGATCATCTACGCT CGGCCTCTGAAGCGCTCTGCACGGGATATGTTATCTGATCCGGATTCTGAAGGTGAACAGGACCAGCCGGAAGCTGAAGATGTACCAGATGACCTGGTTC TAAGGGTTTTCCAATATGCTGTTTCCCACAAGGCTCGACAATTAGTGCTGCGCCAGAATGATTGGTCAACTTGTGCACCTTACTCCAATAAGTTCCCTCA GGGTCTTGGCCCCTTCCCCGACTCCAAGCTTGAGCATCTACATTTGGTGTCTTGCGTCATCGATGATAGATTCAAATCTTTTGGTTTCCCGTTGCTGACG ACATTAGAATTGTTCCACTGTATGTTTGCGTCTTATCACAAGGTTCTCGATCCGTTTTCTACACTCCCATGTTTAAATAGCCTGACTATCGTCAATCCCG AGCACAATGAGCAGCTTGAGACGTTGAAGATTTCGGGAGTTGGGTTGCATAGCATGAAACTGGTGAATACGGATTTCATTTTCGACATATGTGCACCCAA CCTTAAGTACTTTACACTTGTGGAGGGGAAGTTGAAGGATAGGATGGAGAGTAGGATACCGCAGCAGTTCTCGGCGCAAACGTTTCCTTCTCTTGATCAT GCTCATATTACAGTCTCTAGGTTTGGTGATATTGGGAAGGAAAATATGGTGCTCGTGTTACAAGGTTTTCACAACATCAAATCCTTGACTCTATCGAGGG ATATCATCGAGGTACTATGTGCAGGTACTATGTGA
AA sequence Show only first row Show all	>Lus10002820 pacid=23158654 polypeptide=Lus10002820 locus=Lus10002820.g ID=Lus10002820.BGIv1.0 annot-version=v1.0 MDNQRGNPSGSTDRLSNLPDPIIHHILSFVSTKTVVQTSVLSRKWVCVWKDVPALEFNFSDFASGIGSIENPYNFGRFNKFVEMVLSLHNDTGFERIIYA RPLKRSARDMLSDPDSEGEQDQPEAEDVPDDLVLRVFQYAVSHKARQLVLRQNDWSTCAPYSNKFPQGLGPFPDSKLEHLHLVSCVIDDRFKSFGFPLLT TLELFHCMFASYHKVLDPFSTLPCLNSLTIVNPEHNEQLETLKISGVGLHSMKLVNTDFIFDICAPNLKYFTLVEGKLKDRMESRIPQQFSAQTFPSLDH AHITVSRFGDIGKENMVLVLQGFHNIKSLTLSRDIIEVLCAGTM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	6.3	0.8856
AT4G37130			hydroxyproline-rich glycoprote...		Lus10016774 [exp]	12.6	0.7933
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10000740 [exp]	18.8	0.8404
AT2G43990			unknown protein		Lus10008351 [exp]	18.8	0.8811
AT4G12540			unknown protein		Lus10038281 [exp]	22.8	0.8503
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	23.2	0.8707
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	23.6	0.8522
AT5G37010			unknown protein		Lus10007363 [exp]	26.1	0.8629
AT4G31880			unknown protein		Lus10018332 [exp]	26.5	0.8725
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	28.3	0.8725

Compare expression of checked genes

Lus10002820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.