Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34190 119 / 2e-34 SEP1 stress enhanced protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027871 [exp] 182 / 4e-59 AT4G34190 128 / 1e-38 stress enhanced protein 1 (.1) Lus10014093 [exp] 117 / 1e-33 AT4G34190 116 / 7e-34 stress enhanced protein 1 (.1) Lus10019821 [exp] 116 / 4e-33 AT4G34190 119 / 6e-35 stress enhanced protein 1 (.1) Lus10002818 [exp] 99 / 3e-27 AT4G34190 87 / 1e-23 stress enhanced protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301100 [exp] 117 / 1e-33 AT4G34190 140 / 1e-43 stress enhanced protein 1 (.1) Potri.009G096800 [exp] 115 / 5e-33 AT4G34190 130 / 1e-39 stress enhanced protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002821 pacid=23158662 polypeptide=Lus10002821 locus=Lus10002821.g ID=Lus10002821.BGIv1.0 annot-version=v1.0 ATGACGACGACGACGCCGGCGATGGCAGTTTCAGCTCATCTATCTCCGTCGCTCTCCATCTCCGCCCGATATGCTTCCCCTGCTAGCTCCACATCAACCC TCTCGATTTCCCGGCGAGCCAGCTCGGGTTTCGGCCGATTCCGCTGCTCCGGTTTCGCAATTGGGTCGTCTACTCCTCTGTGTAAGGGTTCAAGAACGTT GCTTTTTTTGAACTGGGTTTCTGTTGATTTGGTTGTTATTGGAATTGGAGCTGTTGACCAGTTGGGTATAATCAGGTTACGAATCAGTAGCTCATCAGTG ACATCAAGAACCAGCCGTGGGAGCAAGCCTCGACAAAGGACATCAGTAGTCTCGATAAAATGCGAGCAAAGCAGCAGCCAGAAAGGCAGCAGTCTGGACG TATGGCTAGGGCGAGCCGGGATGATTGGCTTCGCTGTGGCGATCACGGTCGAAGTATCTACCGGAAAAGGCCTCCTCCAGAATTTCGGACTAGCAAGTCC CATGCCTACGGCTGCGTTGGCGATAACAGGATTGGTTGGTGTGCTCACAGCAGTGTTCATCTTCCAGTCCTCGTCGAAAAGTTGA
AA sequence Show only first row Show all	>Lus10002821 pacid=23158662 polypeptide=Lus10002821 locus=Lus10002821.g ID=Lus10002821.BGIv1.0 annot-version=v1.0 MTTTTPAMAVSAHLSPSLSISARYASPASSTSTLSISRRASSGFGRFRCSGFAIGSSTPLCKGSRTLLFLNWVSVDLVVIGIGAVDQLGIIRLRISSSSV TSRTSRGSKPRQRTSVVSIKCEQSSSQKGSSLDVWLGRAGMIGFAVAITVEVSTGKGLLQNFGLASPMPTAALAITGLVGVLTAVFIFQSSSKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	0	1
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	1.4	0.9477
AT5G08050			Protein of unknown function (D...		Lus10021151 [exp]	3.0	0.9261
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	4.2	0.9476
AT3G61870			unknown protein		Lus10012617 [exp]	4.2	0.9432
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	5.3	0.9186
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	5.7	0.9410
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	6.9	0.9306
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10038489 [exp]	7.7	0.9182
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	9.2	0.9308
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	10.0	0.9142

Compare expression of checked genes

Lus10002821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.