Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15320 290 / 1e-95 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 129 / 1e-33 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 112 / 2e-27 Leucine-rich repeat (LRR) family protein (.1) AT1G73066 102 / 7e-24 Leucine-rich repeat family protein (.1) AT1G73080 101 / 3e-23 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT2G25790 100 / 9e-23 Leucine-rich receptor-like protein kinase family protein (.1) AT3G12610 96 / 5e-22 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G47570 96 / 2e-21 Leucine-rich repeat protein kinase family protein (.1) AT4G20940 96 / 3e-21 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 94 / 7e-21 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007417 [exp] 133 / 3e-35 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 131 / 2e-34 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 129 / 1e-33 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10028359 [exp] 117 / 1e-29 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10023323 [exp] 99 / 3e-22 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037705 [exp] 96 / 7e-22 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10004388 [exp] 97 / 1e-21 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006817 [exp] 97 / 2e-21 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10015700 [exp] 93 / 2e-21 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097100 [exp] 318 / 1e-106 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 315 / 1e-105 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 135 / 6e-36 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 134 / 2e-35 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 130 / 4e-34 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 129 / 7e-34 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 128 / 3e-33 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.011G104600 [exp] 106 / 6e-25 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.019G058600 [exp] 105 / 8e-25 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G051700 [exp] 104 / 2e-24 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10002822 pacid=23158660 polypeptide=Lus10002822 locus=Lus10002822.g ID=Lus10002822.BGIv1.0 annot-version=v1.0 ATGACGAAATTACCCTTCTTCTCCTCCAGTCCTCCGATCACCACCGTCATCATCATCATCACCTTCCTCCTCAGTCTCTCAATTCACCCCTTCAAATCCC AATCCTTCACTTCCCCACAAGACATCTCAGCTCTCAAATCCTTCATCTCCTCAATTTCCCCTTCTTCCATCCCTTCCTGGTCATGCCTCGCCTCTTGGAA CTTCACCGCCGGCGCCGATCCATGCCTCCTCCCTCGCCGGACTAACTTCATCTGCGGCCTCACTTGCTCCCCTGACTCAACTCGAGTCACCCAACTCACA CTCGACTCGGTGGGCTACTCGGGTCAAATCACCCCGCTCATCTCCCAGCTCACTTCCTTAACCATCCTCGACTTAGCGGAGAACAGCTTCTCCGGCGAAA TCCCATCATCCATTTCTCAGCTCTCCTCCCTCCAATCATTGAATCTCCGGTCCAATTCCTTCACTGGTGCGATCCCGCCCGGTTTAACCGGTTTGAAACG GGTTGAATCGGTTGACCTGTCCTTGAACCGGTTGGTTGGAGCTTTACCGAAAGGGATGGATTCGATGACGAGTTTGAGGCGGATTGATCTCAGCTTCAAT CGGCTCACCGGATCTTTGCCAAAGCTGCCTCCGAACTTGATCGAGGTCGCATTGAAGGCGAATATGATTTCGGGACGGGTGATGAAGTCGACGTTCGAGT CGGCGACTCAGCTGGAAGTGGTGGAACTCGGCGGGAACTCGCTCGCAGGGAAATTGGAGCGGTGGTTCTTCGATCTGCCGGCGATCCAGCAGGTGAATCT CGCGAATAATAGCTTCACGGAGGTTGAGGTCGGCGGTGGTGGAGGAGGAGGAAGGCGGCTGGTGGCGGTGGATCTGGGGTTTAATTTGATCGGAGGTGAG ATTCCAGCGGGTTTCGCCGGGTTTCCGAGCTTGTCGGCGCTGTCGATGAGGTACAACAGGCTGCGGGGGGAGATTCCGTTGGAGTTGAGTAAGAAGAGGA GCTTAAGGAGGCTGTTTCTGGACGGGAATTTTCTGATCGGGGATCCAGCAGGTGAATCTCGCGAATAA
AA sequence Show only first row Show all	>Lus10002822 pacid=23158660 polypeptide=Lus10002822 locus=Lus10002822.g ID=Lus10002822.BGIv1.0 annot-version=v1.0 MTKLPFFSSSPPITTVIIIITFLLSLSIHPFKSQSFTSPQDISALKSFISSISPSSIPSWSCLASWNFTAGADPCLLPRRTNFICGLTCSPDSTRVTQLT LDSVGYSGQITPLISQLTSLTILDLAENSFSGEIPSSISQLSSLQSLNLRSNSFTGAIPPGLTGLKRVESVDLSLNRLVGALPKGMDSMTSLRRIDLSFN RLTGSLPKLPPNLIEVALKANMISGRVMKSTFESATQLEVVELGGNSLAGKLERWFFDLPAIQQVNLANNSFTEVEVGGGGGGGRRLVAVDLGFNLIGGE IPAGFAGFPSLSALSMRYNRLRGEIPLELSKKRSLRRLFLDGNFLIGDPAGESRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15320			Leucine-rich repeat (LRR) fami...		Lus10002822 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	1.0	0.9532
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10006020 [exp]	3.5	0.9346
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	4.0	0.9423
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	5.7	0.9475
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	6.2	0.9450
AT3G13130			unknown protein		Lus10038793 [exp]	9.5	0.9224
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	9.8	0.9051
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	10.0	0.9377
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	13.0	0.9275
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	13.5	0.9128

Compare expression of checked genes

Lus10002822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.