Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15430 541 / 0 NRPE3A, NRPD3, NRPB3, RPB35.5A, RBP36A DNA-directed RNA polymerase family protein (.1) AT2G15400 494 / 7e-178 NRPE3B, RBP36B DNA-directed RNA polymerase family protein (.1.2) AT1G60620 124 / 2e-32 ATRPAC43 RNA polymerase I subunit 43 (.1) AT1G60850 124 / 2e-32 AAC42, ATRPAC42 DNA-directed RNA polymerase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027873 [exp] 651 / 0 AT2G15430 539 / 0.0 DNA-directed RNA polymerase family protein (.1) Lus10018468 [exp] 119 / 2e-30 AT1G60620 513 / 0.0 RNA polymerase I subunit 43 (.1) Lus10011214 [exp] 114 / 7e-29 AT1G60620 523 / 0.0 RNA polymerase I subunit 43 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097600 [exp] 565 / 0 AT2G15430 547 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.001G369500 [exp] 138 / 1e-37 AT1G60620 508 / 0.0 RNA polymerase I subunit 43 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0509 [flax] [poplar] RBP11-like PF01193 [flax] [poplar] RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain CL0509 [flax] [poplar] PF01000 [flax] [poplar] RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
Representative CDS sequence Show only first row Show all	>Lus10002823 pacid=23158652 polypeptide=Lus10002823 locus=Lus10002823.g ID=Lus10002823.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAGTGTCGTACCAGCGGATGCCGGAGTTGAAGATCAGGGAGATGAAGGACGACTACATGAAGTTCGAGCTCCGCAATACCGACGCCTCCA TGGCCAACGCCCTCCGCCGCGTGATGATCGCCGAGGTCCCCACGGTGGCCATCGACCTCGTCGAGATAGAGGTGAACTCCTCCGTTCTGAACGACGAGTT CATCGCTCACAGGCTGGGCCTCATCCCGCTCACGAGCGAGAGAGCGATGAGCATGCGCTTCTCCCGCGACTGCGACGCCTGCGATGGTGATGGACAGTGC GAGTACTGCTCCGTCGAGTTCCATCTCCGTGCCAAGTGTATCTCCGACCAGACGCTGGATGTTACTAGTAAGGATCTGGTGAGCTCGGACCACACCGTTA TTCCGGTGGATTTCAGTGATATCGCGGGAGATGATTCGTCGGAGCAGAAGGGTGTTATAATTGTGAAGCTGCGCCGGGGGCAAGAGCTAAGACTGCGTGC GATAGCAAGGAAAGGTATCGCGAAAGATCATGCGAAATGGTCACCAGCAGCAACGGTGACATTTATGTATGAACCCGATATCAGCATCAATGAAGACATG ATGAAGAGCTTGTCTCTAGAAGAGAAGCAAAGCGTGGTCGAGAGCAGCCCGACCAAAGTTTTCGACATCGACCCTAATACCCACCGGGTTGTTGTCGTCG ATGCTGAAGCATACACCTACGACGACGAAGTTCTCAAGAAAGTGGAGGCAATGGGAAAGCCGGGTCTCATCGACATTCGTGCCAAAGAGGACAGCTTTAT ATTCACAGTCGAGACGACTGGTGCGGTTAAGGCGTCACAGCTTGTGCTGAATGCCATTGAGATATTGAAGCAGAAGCTGGATGCAGTTCGTTTATCCGAC GACACCGTCGAAGCTGATGATCAGTTCGGTGAACTCGGTGCTCATATGCGTGGAGGCTAG
AA sequence Show only first row Show all	>Lus10002823 pacid=23158652 polypeptide=Lus10002823 locus=Lus10002823.g ID=Lus10002823.BGIv1.0 annot-version=v1.0 MEGGVSYQRMPELKIREMKDDYMKFELRNTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC EYCSVEFHLRAKCISDQTLDVTSKDLVSSDHTVIPVDFSDIAGDDSSEQKGVIIVKLRRGQELRLRAIARKGIAKDHAKWSPAATVTFMYEPDISINEDM MKSLSLEEKQSVVESSPTKVFDIDPNTHRVVVVDAEAYTYDDEVLKKVEAMGKPGLIDIRAKEDSFIFTVETTGAVKASQLVLNAIEILKQKLDAVRLSD DTVEADDQFGELGAHMRGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	0	1
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10027873 [exp]	1.0	0.9418
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	1.4	0.9402
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	2.4	0.9396
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	3.5	0.9386
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	5.5	0.9368
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	6.0	0.9186
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10023400 [exp]	7.0	0.8851
AT5G19950			Domain of unknown function (DU...		Lus10019397 [exp]	7.5	0.9007
AT1G70350			unknown protein		Lus10029157 [exp]	8.0	0.8790
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	8.8	0.9093

Compare expression of checked genes

Lus10002823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.