Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34160 119 / 3e-31 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 100 / 3e-24 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 94 / 4e-22 CYCD3;3 CYCLIN D3;3 (.1) AT2G22490 56 / 1e-08 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G10440 54 / 2e-08 CYCD4;2 cyclin d4;2 (.1) AT1G70210 54 / 4e-08 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 53 / 6e-08 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT4G03270 49 / 1e-06 CYCD6;1 Cyclin D6;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027874 [exp] 262 / 3e-85 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10014089 [exp] 176 / 2e-52 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019825 [exp] 170 / 3e-50 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10018739 [exp] 101 / 2e-24 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10019317 [exp] 92 / 4e-21 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10011507 [exp] 91 / 6e-21 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10024796 [exp] 91 / 1e-20 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10033736 [exp] 52 / 2e-07 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10039738 [exp] 50 / 9e-07 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097800 [exp] 135 / 2e-37 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.001G301800 [exp] 130 / 3e-35 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.005G141900 [exp] 114 / 3e-29 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.007G048300 [exp] 110 / 8e-28 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.002G123000 [exp] 105 / 4e-26 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 105 / 6e-26 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.014G005900 [exp] 60 / 3e-10 AT1G70210 181 / 1e-54 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 56 / 7e-09 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.011G040900 [exp] 56 / 7e-09 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.002G103500 [exp] 55 / 2e-08 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002824 pacid=23158680 polypeptide=Lus10002824 locus=Lus10002824.g ID=Lus10002824.BGIv1.0 annot-version=v1.0 ATGTCCCTCCTTCTCAATCCCCGCGGCAGCTCGTCGCCGCAACTCTCCGATTCCGACGAGCTGACCTCCTTCTCCTCCCTCTACTGCGACGAAGACCGTC TCGAAGAAGCCGGAGAAGGGGAGGTCCTCGATCCTCTTCTCGACCGTGTACCCATCTCGGCAGCAGAAGATGACGACGACGAGCTCTGTTCTCTGTTCCT TAAAGAGCAGAAACTTTACTTTTGGTCGAAGACGATCCAGAGAATGGAGCTTCTGGTTCTATCAGAGCTGAAATGGAAGATGCATCCAGTGACTCCAATC TCGTTCATGGATTACATCGTTGAGAGGTTTCAGCTGAAGAACGGTGATGCACATTGGGAGTTTCTCACCAGATGCCACCGTCTCCTTCTCTGCCTTTTAT CCGATGCAAGATCTGTCAGATATCGTGCATCTGTTCTAGCAACTGCTACAGTGATGAACGTTATTGACCAAGTTGAGCACTTTAATTTCATCATTGACTC TCAGACTCAGTTCCTCTCTTCGCTCAACATCAGCCAGGAGAAGGTGCAGGAGTGTTATGAGGTGATAATGGAGGTAGTAGCAAGAAGAAACAAGAGGAAG TACTCTTCTTCTTCTTATGAAGAAGAAGATGATAAGTTTCTTCCAAGTAGTCCTAGTGAGGTGATTGATGCTGCAGCAAACAACAACACTGATGCATCAT TCAGCTGTGACAGCAGCAGCAGTAGCTCAAACCAGTCATTTTCAACTTTTCCTTCTTCTCAGAAGAAGAAGAAGAAGAAGAGCAGAACCCAAGAAAAAGA AGAAGACCAATGGGTTCTTGTTGGTTTCGTTGGGACTCCCAATTAG
AA sequence Show only first row Show all	>Lus10002824 pacid=23158680 polypeptide=Lus10002824 locus=Lus10002824.g ID=Lus10002824.BGIv1.0 annot-version=v1.0 MSLLLNPRGSSSPQLSDSDELTSFSSLYCDEDRLEEAGEGEVLDPLLDRVPISAAEDDDDELCSLFLKEQKLYFWSKTIQRMELLVLSELKWKMHPVTPI SFMDYIVERFQLKNGDAHWEFLTRCHRLLLCLLSDARSVRYRASVLATATVMNVIDQVEHFNFIIDSQTQFLSSLNISQEKVQECYEVIMEVVARRNKRK YSSSSYEEEDDKFLPSSPSEVIDAAANNNTDASFSCDSSSSSSNQSFSTFPSSQKKKKKKSRTQEKEEDQWVLVGFVGTPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10002824 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	1.0	0.8318
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	16.3	0.7758
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	17.8	0.7604
AT5G10310			unknown protein		Lus10035922 [exp]	21.4	0.7275
AT2G19540			Transducin family protein / WD...		Lus10025341 [exp]	22.0	0.7838
					Lus10002962 [exp]	29.0	0.6871
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10001997 [exp]	31.3	0.7631
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10007755 [exp]	34.6	0.6850
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	40.3	0.7485
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	41.4	0.7376

Compare expression of checked genes

Lus10002824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.