Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34150 216 / 2e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G63220 58 / 2e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G55470 55 / 3e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027875 [exp] 275 / 3e-93 AT4G34150 246 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019826 [exp] 220 / 1e-70 AT4G34150 191 / 2e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014088 [exp] 219 / 1e-70 AT4G34150 202 / 4e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10029565 [exp] 67 / 9e-14 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 67 / 1e-13 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040291 [exp] 59 / 1e-10 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10016347 [exp] 51 / 4e-07 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 50 / 9e-07 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301900 [exp] 231 / 3e-76 AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G097900 [exp] 223 / 9e-73 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G123200 [exp] 192 / 5e-61 AT4G34150 185 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G155600 [exp] 68 / 3e-14 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203000 [exp] 55 / 2e-09 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G198301 [exp] 50 / 5e-07 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 50 / 5e-07 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10002825 pacid=23158666 polypeptide=Lus10002825 locus=Lus10002825.g ID=Lus10002825.BGIv1.0 annot-version=v1.0 ATGTCGTTTGTTTCCGGAATTCAAGACCAGGTTATCGAAGTTAGAGTGATTGGATGCACGAAATTGAAGGACACTGAATGGTTATCAAGGCAAGATCCAT ACGTCTGCGTTGAGTACGGCAATAACAATTCTCGGACAAGAACTTGTACTGATGGTGGGAAGAACTCTACGTTTCAAGAGAAGTTTGTGTTTACGTTGAT TGAAGGGTTGAGGGAGCTGAATGTTGTGGTTTGGAACAGTAATACTTTGACGTTTGATGATTTCATTGGTAATGGGAGAATTCAGTTGCAGAAGGTGCTT GCGGAAGGATACGACGACTCGAATTGGCCACTACAGACGAAAACCGGAAGGTATGCAGGAGAAGTGAGACTCATAATGCACTATGCCAGTGCCAGAAAAC ACGATACGAGTTACGCTCCTTCAGCACCACCGCCATATCCATCACATGTTCCTCCTTACTCAATGTACTCAGCACCACCTCCTGCCAACACATCCTCGTC GTACTATTCGTATGCACCATCGCCATACGCTAACGCTCCTCCGACTGCATCCTATCCGACGTCATATCATTACTCCTCGCCGTATCCTCCTAACCCGTCT CCGGCTTATCCTTTGCTCCCAACTCCTTATTCTCCATCCCCATATCCACCATCATCTCCTTCACCTTATCCTCCAGGTAAATGCCATTACTCTGCGATGC TTATCTCGTACGGATCTTGTTCGTTAACTAACCCTGGTTTGGTCCCTTTCGTGTAG
AA sequence Show only first row Show all	>Lus10002825 pacid=23158666 polypeptide=Lus10002825 locus=Lus10002825.g ID=Lus10002825.BGIv1.0 annot-version=v1.0 MSFVSGIQDQVIEVRVIGCTKLKDTEWLSRQDPYVCVEYGNNNSRTRTCTDGGKNSTFQEKFVFTLIEGLRELNVVVWNSNTLTFDDFIGNGRIQLQKVL AEGYDDSNWPLQTKTGRYAGEVRLIMHYASARKHDTSYAPSAPPPYPSHVPPYSMYSAPPPANTSSSYYSYAPSPYANAPPTASYPTSYHYSSPYPPNPS PAYPLLPTPYSPSPYPPSSPSPYPPGKCHYSAMLISYGSCSLTNPGLVPFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34150			Calcium-dependent lipid-bindin...		Lus10002825 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10043227 [exp]	2.0	0.8738
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	4.9	0.8837
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	6.3	0.8569
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	9.8	0.8439
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	9.9	0.8507
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	15.0	0.8681
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	17.3	0.8393
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	19.2	0.8457
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	19.7	0.8537
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	20.0	0.8668

Compare expression of checked genes

Lus10002825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.