Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19420 753 / 0 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) AT3G50110 590 / 0 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) AT5G39400 154 / 3e-41 ATPTEN1 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) AT5G07740 53 / 7e-07 actin binding (.1) AT2G25050 49 / 1e-05 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT1G31810 49 / 1e-05 AFH14 Formin Homology 14 (.1) AT5G58160 44 / 0.0002 actin binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027876 [exp] 1047 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010265 [exp] 513 / 4e-179 AT3G19420 555 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010266 [exp] 133 / 1e-35 AT3G50110 149 / 5e-42 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) Lus10035830 [exp] 52 / 2e-06 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 50 / 4e-06 AT5G58160 608 / 0.0 actin binding (.1) Lus10003482 [exp] 49 / 1e-05 AT5G07740 714 / 0.0 actin binding (.1) Lus10015724 [exp] 48 / 3e-05 AT5G07740 723 / 0.0 actin binding (.1) Lus10023804 [exp] 44 / 0.0004 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 44 / 0.0006 AT1G31810 731 / 0.0 Formin Homology 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302000 [exp] 832 / 0 AT3G19420 848 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.009G098000 [exp] 811 / 0 AT3G19420 811 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.007G047900 [exp] 660 / 0 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.017G089700 [exp] 153 / 1e-40 AT5G39400 555 / 0.0 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) Potri.012G067900 [exp] 59 / 1e-08 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 59 / 1e-08 AT5G07740 722 / 0.0 actin binding (.1) Potri.018G108000 [exp] 49 / 1e-05 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185501 [exp] 47 / 3e-05 AT5G58160 598 / 0.0 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein
Representative CDS sequence Show only first row Show all	>Lus10002826 pacid=23158668 polypeptide=Lus10002826 locus=Lus10002826.g ID=Lus10002826.BGIv1.0 annot-version=v1.0 ATGGATCCAGCACCTGCTGATTCACCACCTGTATCTGCAAAATCTCCTGAAATACAACCTGCTCCTCCTCCTGTAGATTCTGCAGATACTTCCGTACGTG ATGTGCCGTCAAAGTTGTCTTCGTGGGCTAAAAGTTTGAAGATCCCTCAGCCTTTGGCTACCACATCAGATGATTCACCGACTGGGGGGGCAAAGTCAAC CTTTTCACGTTTCACAAGTGGTTTTGGACTGCGTTCTTCATCTCCAAAATCTCCTCCAGCAGAAGATAGTTCACCGGGATCCCCAGCAACATCTGGTTTG TTTGGTACTCTTACCAAAGGTTTAGTTGATACATCTAAGAATGCAGTGAAAGCAGTACAGGAAGGGGAATTTGATCTTGATATGACTTATATCACAGAGA ATATAATTGCTATGGGCTTTCCTGCTGGTGATATGAGTTCTGGATTCTTTGGCTATGTTGAGGGGTTCTACCGTAACCACATGGAAGAAGTAATAAAGTT TTTTGAAACATATCACAAGGGGAAGTACAAAGTATACAACCTTTGTCTCGAGAGGCTTTATGATGCATCGTTGTTTGAAGGAAAGGTGGCTAGTTTTCCA TTTGATGACCACAACTGTCCCCCAATTCAACTGATAACATCATTCTGCCATAGTGCTTACTCTTGGTTGAAGGAAGATATTGAGAATGTAGTGGTCGTGC ACTGTAAGGCCGGAATGGCAAGAACAGGACTCATGATTTCTAGCCTTCTTTTGTACTTGAAATTCTTTCCAACAGCAGAAGAATCAATTGATTACTACAA TCAGAAGAGATGCTTTGATGGAAAAGGGCTTGTTCTTCCTAGTCAAATCAGATATGTGAAGTATTTCGAGCGTATCTTAACATACTTCAATGGCGAAAAC CAGCCTGGCCGAAAGTGCATGCTAAGAGGATTTCGGCTTCACCGGTGCCCTTACTGGATCCGTCCTGCTATAACTGTTTCCAATCATAATGGTATCCTCT TCTCCACCAAAAAGCATGCAAGGACGAAGGATTTGTCGCCAGAAGACTACTGGTTCAGTGCACCAAAGAAAGGAGTTATGGTCTTTGCTCTTCCTGGGGA GCCTGGTCTGACTGAGGTGGCGGGTGACTTCAAAGTCCAGTTTCATGACCGCCAAGGAGACTTTTACTTCTGGTTGAACACAACAATGATGGAAAACCGA GTTATCCTCAACACTGGCGATATTGATGGTTTTGACAAGAGGAAACTGCCCTCGCCAGGGTTCCAGGTTGAGGTGGTTCTGGTAGATGCTAATGCTGCTG TTCCAGCAACGCAGAAGTCGGATGGAGGATCAAGCACGGCTCCTGCATCTGCAGAAACAGCAACTTCAGCGGCAAGCACAGCCAGTGCAGAGCAGCAGAT CAAAGACTCCGCAAGTGGCGATAAGGATGACGTGTTTTCAGATAACGAAAATGATGAGCCTTCAAAAGGGCAAGCAAGAGCTGAGGGGGCAGCGCCACAA GCCGCCGGAGAAGGATCTTCTCCGGCGGCTACTACGGCTGCTTCTGAAACCAATACGAAAAAAGATCAAGCTGCCTCCAGTGTAACAAAAGCAACTGAGC AATTGTCTCTGGGGAATACAGCCTCCCAACCGGCGGTGGTTAATGCCAGTCAGCCGAAGCCCACAGCTGTCTCGGGAGTTGAGGCAACAACCAACACGGA GAGTGAGTTCAAGGCAATGGCTGCTGATGCGTCTGTGTTCACTTTCGGAGACGATGAAGACTACGAAAGTGAATGA
AA sequence Show only first row Show all	>Lus10002826 pacid=23158668 polypeptide=Lus10002826 locus=Lus10002826.g ID=Lus10002826.BGIv1.0 annot-version=v1.0 MDPAPADSPPVSAKSPEIQPAPPPVDSADTSVRDVPSKLSSWAKSLKIPQPLATTSDDSPTGGAKSTFSRFTSGFGLRSSSPKSPPAEDSSPGSPATSGL FGTLTKGLVDTSKNAVKAVQEGEFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKGKYKVYNLCLERLYDASLFEGKVASFP FDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDGKGLVLPSQIRYVKYFERILTYFNGEN QPGRKCMLRGFRLHRCPYWIRPAITVSNHNGILFSTKKHARTKDLSPEDYWFSAPKKGVMVFALPGEPGLTEVAGDFKVQFHDRQGDFYFWLNTTMMENR VILNTGDIDGFDKRKLPSPGFQVEVVLVDANAAVPATQKSDGGSSTAPASAETATSAASTASAEQQIKDSASGDKDDVFSDNENDEPSKGQARAEGAAPQ AAGEGSSPAATTAASETNTKKDQAASSVTKATEQLSLGNTASQPAVVNASQPKPTAVSGVEATTNTESEFKAMAADASVFTFGDDEDYESE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	0	1
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	1.0	0.9465
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10027876 [exp]	1.4	0.9432
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	2.4	0.9404
AT5G20660			Zn-dependent exopeptidases sup...		Lus10009230 [exp]	4.8	0.9111
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	4.9	0.9207
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	5.7	0.9226
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	5.7	0.9032
AT2G31130			unknown protein		Lus10017672 [exp]	5.9	0.9339
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	6.0	0.9342
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10024126 [exp]	6.5	0.8964

Compare expression of checked genes

Lus10002826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.