Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47128 563 / 0 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 556 / 0 Granulin repeat cysteine protease family protein (.1) AT3G19390 519 / 0 Granulin repeat cysteine protease family protein (.1) AT4G36880 399 / 8e-137 CP1 cysteine proteinase1 (.1) AT3G19400 387 / 1e-132 Cysteine proteinases superfamily protein (.1.2) AT1G09850 376 / 5e-127 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G35350 350 / 7e-118 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 343 / 4e-115 XCP2 xylem cysteine peptidase 2 (.1) AT5G50260 340 / 6e-114 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT4G23520 331 / 1e-110 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027877 [exp] 818 / 0 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 694 / 0 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 581 / 0 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10024801 [exp] 527 / 0 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10018735 [exp] 392 / 6e-133 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 366 / 6e-123 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10018083 [exp] 335 / 1e-111 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042078 [exp] 333 / 3e-111 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10006542 [exp] 329 / 7e-110 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302100 [exp] 623 / 0 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 616 / 0 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 554 / 0 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 419 / 1e-144 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 406 / 2e-139 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 375 / 1e-126 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 357 / 6e-121 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.012G090900 [exp] 340 / 8e-114 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087400 [exp] 338 / 2e-113 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.011G066800 [exp] 338 / 2e-111 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF00396 [flax] [poplar] Granulin Granulin CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10002827 pacid=23158679 polypeptide=Lus10002827 locus=Lus10002827.g ID=Lus10002827.BGIv1.0 annot-version=v1.0 ATGGCGACCTTCTTCTTCTCCCTTCTCATTCCCGTCCTCCTCTTAGCCGCCGTCTCCTCCGCCTTGGACACGTCCATCATCGACTACAACGCCCGCCACG GCACCCCAGTCGTCCCGGAGAGGTCCGAGGCGGAGCTCCGAGCCATGTACGATAACTGGGCCCTGACCCACCGCAAGAGCTACCACAACGCCGGATTCCT TGGGGGAGCGGCGGAGGAGAAGGAGAAGAGGTTCGAGATCTTCAAGGAGAACTCGAGGTTCGTCGACGAGCATAACTCCGTCGAGCGGAGCTACAGAGTC GGTCTGAATCGGTTCGCTGATCTGACCAACGAGGAGTACAGGTCCATGTATTTGGGAGCGAAGTTTGAGAAGAAGGAGAGGAAAGTCAACGGATCGTCGT CGGATGAGTATTTTTTCAAAATGGGAGATGACCTTCCGGCGAGCGTTGATTGGAGGGAGAAGGGAGCTGTTGCTCCGGTCAAAGATCAAGGCCAGTGCGG GAGTTGCTGGGCCTTCTCAACCATTGGAGCAGTAGAAGGGATCAACCAGATCGTGACCGGTGAGATGATCACTCTATCGGAGCAGGAGCTTGTCGATTGC GACAGGTCCGTTAATGCTGGCTGCGACGGAGGTCTCATGGACTATGCATTCGAGTTCATCATCAACAATGGCGGCATCGATACCGAAGAAGACTATCCTT ACAAGGCTGCTGATAACGTTTGTGACTCGAACAGGAAAAATGCCAAAGTTGTAACCATTGATGGGTACAAAGATGTTCCAACAAACGATGAGAAGTCACT GAAGAAGGCTGTTGCAGGTCAGCCTGTAAGTGTGGCCATTGAAGCTGGCGGTAGGGCCTTCCAGCTCTACGAATCGGGAGTCTTCACGGGCCAATGCGGG ACGCAACTCGACCACGGAGTGGTCGCAGTCGGCTACGGGACCGAGAAAGGCGTGGACTACTGGATCGTAAGGAACTCGTGGGGTCCAGATTGGGGAGAGA AGGGCTACATCAGGATGGAGCGCAACGTTGCCAAGACCAAATCAGGGAAATGTGGCATTGCCATAGAGGCTTCATATCCAACCAAGAAAGGAGGCAACCC TCCTAAACCCGGTCCAACTCCTTCCACTCCTCCACCGCCTCCGGTCGCTCCTCCCTCCATTTGCGACAGCTACTACTCCTGCCCTGCTAGCACCACTTGC TGCTGCGTGTACAAGTACGGCAGCTACTGCTTCGCATGGGGATGCTGTCCTCTCCAGTCTGCAACTTGCTGCGACGATCACTACAGTTGCTGCCCTCATG ACTACCCCGTCTGTGACCTCAAGGCTGGAACTTGCAGAATGAGCAAGGACAATCCATTTGGAGTGTCAACGATGAAGAGGTTCTTGGCTAAGAGCAGCAG ACCTCATTTGCAGAGGGAGGTTGTGAGCAGTGCTTGA
AA sequence Show only first row Show all	>Lus10002827 pacid=23158679 polypeptide=Lus10002827 locus=Lus10002827.g ID=Lus10002827.BGIv1.0 annot-version=v1.0 MATFFFSLLIPVLLLAAVSSALDTSIIDYNARHGTPVVPERSEAELRAMYDNWALTHRKSYHNAGFLGGAAEEKEKRFEIFKENSRFVDEHNSVERSYRV GLNRFADLTNEEYRSMYLGAKFEKKERKVNGSSSDEYFFKMGDDLPASVDWREKGAVAPVKDQGQCGSCWAFSTIGAVEGINQIVTGEMITLSEQELVDC DRSVNAGCDGGLMDYAFEFIINNGGIDTEEDYPYKAADNVCDSNRKNAKVVTIDGYKDVPTNDEKSLKKAVAGQPVSVAIEAGGRAFQLYESGVFTGQCG TQLDHGVVAVGYGTEKGVDYWIVRNSWGPDWGEKGYIRMERNVAKTKSGKCGIAIEASYPTKKGGNPPKPGPTPSTPPPPPVAPPSICDSYYSCPASTTC CCVYKYGSYCFAWGCCPLQSATCCDDHYSCCPHDYPVCDLKAGTCRMSKDNPFGVSTMKRFLAKSSRPHLQREVVSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10002827 [exp]	0	1
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	5.7	0.9677
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	10.5	0.9583
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	11.6	0.9588
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	14.4	0.9499
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	15.1	0.9553
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	17.0	0.9562
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	18.0	0.9504
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	18.6	0.9559
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	19.0	0.9515
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	20.2	0.9527

Compare expression of checked genes

Lus10002827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.