Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19320 350 / 7e-118 Leucine-rich repeat (LRR) family protein (.1) AT1G49750 339 / 1e-113 Leucine-rich repeat (LRR) family protein (.1) AT4G06744 278 / 5e-91 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 235 / 3e-71 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 229 / 5e-71 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 234 / 6e-71 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 227 / 5e-68 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT1G12040 221 / 7e-66 LRX1 leucine-rich repeat/extensin 1 (.1) AT4G18670 218 / 3e-64 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 218 / 5e-64 LRX2 leucine-rich repeat/extensin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027878 [exp] 632 / 0 AT3G19320 408 / 2e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10019830 [exp] 436 / 1e-153 AT1G49750 375 / 2e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10010049 [exp] 264 / 3e-85 AT4G06744 442 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) Lus10014085 [exp] 251 / 4e-83 AT1G49750 224 / 2e-71 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 226 / 4e-70 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 230 / 2e-69 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10012929 [exp] 217 / 5e-67 AT4G29240 459 / 1e-160 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 213 / 3e-63 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 206 / 3e-63 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098601 [exp] 415 / 3e-143 AT3G19320 421 / 5e-143 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098700 [exp] 297 / 3e-98 AT4G06744 405 / 9e-140 Leucine-rich repeat (LRR) family protein (.1) Potri.001G302500 [exp] 296 / 8e-98 AT4G06744 411 / 5e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.014G024300 [exp] 285 / 3e-93 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 229 / 4e-70 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 231 / 6e-70 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 230 / 1e-68 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 227 / 1e-66 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 219 / 1e-66 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 219 / 3e-66 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10002828 pacid=23158672 polypeptide=Lus10002828 locus=Lus10002828.g ID=Lus10002828.BGIv1.0 annot-version=v1.0 ATGCACATAACCGATTCGTGGAACGGAAAAAACGTCTGTAATTACGATGGATTCACGTGCGCAAAGAGGCCGGACGTCAACAAGAGAGCCGTCGCCGCCT TGGACTTCAACGGCTACGGATTCTTTGGCAAGAAACTCAACCTGCAGGGGCTCATCGACGAGCTCGTCGACCTAACTCTGTTCCACGCCAATTCCAACAA CTTCACCGGTGAGATCCCGCCGTACCTCGGCTCCAAGATCAAGTACCTCTACGAAATTGACCTCAGCAACAACAAGTTCTGCGGCGATTTCCCCAAGGAG ATCCTCGACGCCGCCAACGCCTCCTTCATCGACCTCCGCTTCAACTCCTTTTCCGGCCAAGTGCCAGACAAGATCTTCAACCAAGACCTAGACGTCCTTC TCCTCAACAACAACAAGTTCACCGGATGCCTCCCGGAGAATATTGGCAACACGCCGGCGATATACCTAACACTCGCCTACAACCAATTCACGGGAGCGAT CCCGAAATCGGTGGGAAGCTGCAAGAACCTTCTAGAAGTCCTCTTCCTCAACAACAAATTCTCTGGCTGTTTGCCTAGCGAGATCGGGAACCTGAACAAG GCGAGGATATTCGACGTCGGAGATAACTCACTCAGTGGTCCGATCCCGGGCTCCTTCGCCTGCCTGTCGGCGATGCAGATTCTGAACCTGGCGAGGAACA AGCTGTACGGAGCGGTGCCGGAAGGAGTATGCAAGCTGCCGAAGATGACGAATCTGTCGTTGTCCGGGAATTATTTCACGCAGGTCGGGCCGGCGTGTAG AGATCTGATCAAGGAGAAGATCCTCGACGTGCGGGGGAACTGTATTCTGGATCTGCCGGGGCAGAGGTCGGCGGCGGAGTGTGCTCGGTTCTTCTCCGGG AAGCTTAGCTGTCCTAACGAGAAGTGGATGGTGGAGCATGTGCCTTGTAAGAAAGGGACGAAGGTGGAGTACTCCCTGGAATTGGAGGCAGGGGATTCGC CGGCGCCGGCGCCGTCGATGGCTTATATTGCTCTGGAGCCTAACAGGGTGAGATAG
AA sequence Show only first row Show all	>Lus10002828 pacid=23158672 polypeptide=Lus10002828 locus=Lus10002828.g ID=Lus10002828.BGIv1.0 annot-version=v1.0 MHITDSWNGKNVCNYDGFTCAKRPDVNKRAVAALDFNGYGFFGKKLNLQGLIDELVDLTLFHANSNNFTGEIPPYLGSKIKYLYEIDLSNNKFCGDFPKE ILDAANASFIDLRFNSFSGQVPDKIFNQDLDVLLLNNNKFTGCLPENIGNTPAIYLTLAYNQFTGAIPKSVGSCKNLLEVLFLNNKFSGCLPSEIGNLNK ARIFDVGDNSLSGPIPGSFACLSAMQILNLARNKLYGAVPEGVCKLPKMTNLSLSGNYFTQVGPACRDLIKEKILDVRGNCILDLPGQRSAAECARFFSG KLSCPNEKWMVEHVPCKKGTKVEYSLELEAGDSPAPAPSMAYIALEPNRVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	0	1
AT1G23850			unknown protein		Lus10030860 [exp]	2.0	0.9393
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	2.2	0.9467
AT4G01410			Late embryogenesis abundant (L...		Lus10030193 [exp]	3.5	0.9356
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	4.2	0.9191
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	5.5	0.8914
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	6.3	0.9353
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	6.3	0.9003
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	8.9	0.9275
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10025163 [exp]	10.8	0.9066
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10004917 [exp]	11.4	0.8429

Compare expression of checked genes

Lus10002828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.