Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37880 408 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 389 / 2e-134 zinc ion binding (.1.2) AT5G09630 310 / 2e-103 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G55070 96 / 7e-22 LisH/CRA/RING-U-box domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027883 [exp] 751 / 0 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10019837 [exp] 464 / 2e-164 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 454 / 1e-160 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10020487 [exp] 338 / 5e-114 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10007106 [exp] 131 / 1e-34 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10030305 [exp] 104 / 6e-24 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 102 / 3e-23 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10018464 [exp] 45 / 6e-05 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10011219 [exp] 44 / 0.0001 AT1G61150 392 / 6e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128600 [exp] 501 / 1e-178 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 479 / 7e-170 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 412 / 3e-143 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 404 / 5e-140 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.008G047300 [exp] 100 / 4e-23 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2) Potri.011G046200 [exp] 45 / 4e-05 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002832 pacid=23158648 polypeptide=Lus10002832 locus=Lus10002832.g ID=Lus10002832.BGIv1.0 annot-version=v1.0 ATGGATTTGAATCCCGTCAAGGATGCATTTGATCGTGTTGCGAAGAAGCAAAAGCGATCCAGTTCCAATACTCAGGAAGTACTCGACCAGGTTGTGCAAG AAATCGAAACAGCAATCGGAACTATCCAATCCGAAACTACCCTTAACTCCTCCGGATCCCACTGCAAAACCGTGCTGGTTGAACTCAAGAAAAAGCTGCA GGAAATCGGCCCCCTCGGTCAACTGGAAGGCAAAGATAAAGAACTGAGCATAGCCTTGAACAAGTACGCCAAGCAGCTTGACAGATCCTTCATCCCAGAC ATATTCAAGGCATACAGAGACAACATCAAATTCGACACCAGCACTTTAAACCAGATCGTTGCGAGCCATTTCTACCGAGAAGGCCTGTTTGAAATCGGGG ATCACTTCATCAACTCAGCCAACGAACAACCCCCCGATTCTGCTCTCGCAACGAGAGCCCTATTCCACGAGATGTACACGATTCTCGAAGCTGTCAAGAT TCGGAACTTGGCTCCTGCACTAGCTTGGGTCAAACAGAACGATAATTCTTCGGACCTCGAACTCAAGCTTCACCAGCTACAGTTTGTCGAAATACTACGA AACCGGAGCAGAAAAGAAGCTCTCGACTATGCCAGGACCAACATCACACCATTTGCCAGCAGCCATTTCGTGGAACTCCAAAAGACCATGGCGTGTCTCC TCTGGTCCGGTAAACTAGATCGATCTCCATACTCCGAACTACTATCCCCAACGAATTGGACCTCGGTCTCCGCGGAGCTCACCAGGCAATTCTGTTGCAG TCTACAAAGTCCGTTGTCGGTATCGATATCGGCAGGGATCCAAGGGCTGCCGACTCTGTTGAAGTTCGTCACTGTGATGGCTGCGACGAAGAAGTGGCAG ACGATGGAGGAGTTACCGGTCCCGGTCGAGCTGGATGGTTCGATGCAGTTCCATTCGGTGTTTGTGTGTCCGGTGTTGAAGGAGCAGTCGACGGAGGGGA ATCCACCGATGCTGATGTCGTGCGGGCATGTGTTGTGTACGCAGTCAATCGGTAAGATGTCGAAGAACCATACGAAGAGGTTCAAGTGCCCATACTGCCC TACTGATATCGATTCAACAATGTGTAGACCGGTATACTTCTGA
AA sequence Show only first row Show all	>Lus10002832 pacid=23158648 polypeptide=Lus10002832 locus=Lus10002832.g ID=Lus10002832.BGIv1.0 annot-version=v1.0 MDLNPVKDAFDRVAKKQKRSSSNTQEVLDQVVQEIETAIGTIQSETTLNSSGSHCKTVLVELKKKLQEIGPLGQLEGKDKELSIALNKYAKQLDRSFIPD IFKAYRDNIKFDTSTLNQIVASHFYREGLFEIGDHFINSANEQPPDSALATRALFHEMYTILEAVKIRNLAPALAWVKQNDNSSDLELKLHQLQFVEILR NRSRKEALDYARTNITPFASSHFVELQKTMACLLWSGKLDRSPYSELLSPTNWTSVSAELTRQFCCSLQSPLSVSISAGIQGLPTLLKFVTVMAATKKWQ TMEELPVPVELDGSMQFHSVFVCPVLKEQSTEGNPPMLMSCGHVLCTQSIGKMSKNHTKRFKCPYCPTDIDSTMCRPVYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	0	1
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	5.6	0.7452
AT2G30530			unknown protein		Lus10034444 [exp]	6.3	0.7331
AT1G52343			unknown protein		Lus10007686 [exp]	6.6	0.6651
AT5G59830			unknown protein		Lus10040857 [exp]	13.0	0.6795
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	21.5	0.6749
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	28.3	0.6231
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	29.2	0.6654
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10002640 [exp]	29.6	0.6997
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	30.1	0.6803
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	32.2	0.6606

Compare expression of checked genes

Lus10002832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.