Plant FIBer expression Database

Lus10002833 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49645 163 / 1e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027884
[exp]
393 / 3e-141 AT3G49645 169 / 6e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G091300
[exp]
185 / 9e-59 AT3G49645 219 / 4e-72 unknown protein
PFAM info
Representative CDS sequence
>Lus10002833 pacid=23158674 polypeptide=Lus10002833 locus=Lus10002833.g ID=Lus10002833.BGIv1.0 annot-version=v1.0
ATGGCGATCGACGGCAGCAAAGAGTCCGGAGCTCAAATGAATGCGCAAACTCTACAAATACTCAAAGACTTCTTGACGAGGGTAGCGAAGCTGGAGGATT
TCGTAGCTTCCGCAAGCCGGTTTCTCGGCGGGTTTCATCAATCTCTTGAGTTTCTCAGGCGACCTCCGATAGACATGGAATCGAAGCTGCTGAGTAAGAT
CATTGCTGCTAATGAGACGAAGAGGATGAAATCGTACATTGAATCAGGCTGCAGCAACGGCTTTGACAGAGTGCAGTACACGAGCCAGTCCAAATCGATA
CTTAATGAGCTGGAGCAGCTCATGGAAGATATGTCAGGTGTGGTTCGAGATTCTAATCGGCCGTCAATACCTTTCGAAGTTGAAGATCTTTGTGAGCAAC
TGGAGCAGCAAGATCTATCTCGGGGCGAGCAAGAAAGTGAGGAGGCAGCACTGCTCATTGCTTCGTCCCTTGGTGTCATTTACAGCATGCTGAAGCAGGA
TTATGTAATGCAGGGGAAGATTGTCGAATCGTTGAGTCTCAAATCGACAGCAGGAGAATTAGGGAGCTATTCGTTGATGTGGTCGCTTCGACCTTACGTT
GACGACGATATCATGCAACAAGCCTGGAGATTGATCAACTAG
AA sequence
>Lus10002833 pacid=23158674 polypeptide=Lus10002833 locus=Lus10002833.g ID=Lus10002833.BGIv1.0 annot-version=v1.0
MAIDGSKESGAQMNAQTLQILKDFLTRVAKLEDFVASASRFLGGFHQSLEFLRRPPIDMESKLLSKIIAANETKRMKSYIESGCSNGFDRVQYTSQSKSI
LNELEQLMEDMSGVVRDSNRPSIPFEVEDLCEQLEQQDLSRGEQESEEAALLIASSLGVIYSMLKQDYVMQGKIVESLSLKSTAGELGSYSLMWSLRPYV
DDDIMQQAWRLIN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49645 unknown protein Lus10002833
[exp]
0 1
AT4G36290 CRT1 compromised recognition of TCV... Lus10014276
[exp]
5.7 0.8331
AT1G78090 ATTPPB Arabidopsis thaliana trehalose... Lus10039339
[exp]
7.7 0.7858
AT3G07020 UGT80A2, SGT UDP-glucosyl transferase 80A2,... Lus10022815
[exp]
7.7 0.8201
AT4G17190 FPS2 farnesyl diphosphate synthase ... Lus10022545
[exp]
12.1 0.8281
AT5G10070 RNase L inhibitor protein-rela... Lus10002091
[exp]
14.4 0.8238
AT4G30900 DNAse I-like superfamily prote... Lus10022154
[exp]
25.0 0.7882
AT5G06210 RNA binding (RRM/RBD/RNP motif... Lus10013306
[exp]
27.9 0.7876
AT5G47890 NADH-ubiquinone oxidoreductase... Lus10030922
[exp]
29.1 0.8097
AT2G35840 Sucrose-6F-phosphate phosphohy... Lus10005654
[exp]
32.4 0.7598
AT5G15220 Ribosomal protein L27 family p... Lus10007170
[exp]
34.2 0.8099

Lus10002833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.