Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34120 261 / 6e-88 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) AT4G36910 241 / 3e-80 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) AT5G10860 45 / 2e-05 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027885 [exp] 250 / 9e-83 AT4G34120 157 / 8e-47 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10004992 [exp] 193 / 1e-60 AT4G36910 248 / 1e-82 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10041576 [exp] 189 / 3e-59 AT4G36910 206 / 2e-66 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10019117 [exp] 44 / 4e-05 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 45 / 6e-05 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 42 / 0.0001 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 42 / 0.0002 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G303900 [exp] 265 / 4e-89 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.007G046400 [exp] 247 / 2e-82 AT4G36910 301 / 5e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.009G099200 [exp] 246 / 6e-82 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G140800 [exp] 244 / 3e-81 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G161500 [exp] 49 / 6e-07 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 44 / 2e-05 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10002834 pacid=23158682 polypeptide=Lus10002834 locus=Lus10002834.g ID=Lus10002834.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCTTCTTCTACTTGTTTCACTTCAGTTATTAATAATCATTCTCCTTCCCCACTCCTTTCTCTGCTCCCTTCCGCCTTTACCCTCAACTCCT CATGCCGCCCTCCTCCTCCGCCGCAGCTCCGCCGTCTCAGGTTCTCTTATCGGCAGCTGCCACGTGTCGTCGTCGCCCTTGGTTCTCTGGCCAACTCTGC TCCGGCGAGAAATGGGACGTATAAAGTGGGGGATTTCATGACCAGGAAGGATCGTTTGTTCGTTGTTAAGCCTTCCACTAGCGTTGATGAAGCGTTGGAG GTTATCGTCGAGAAGAGAGTTACAGGCTTCCCTGTGATTGATGATCAATGGAATTTGGTTGGCGTTGTTTCGGATTATGACTTGTTAGCACTCGACACTA TCTCAGGTGGCAATGACAACGATAGCAACTTGTTTCCCGACGTCGATAGCACTTGGAAAACGTTTAACGAGATCCAGAAGCTGGTAGGGAAGAACCATGG TAAAGTCGTTGGTGATCTGATGACTCCTAATCCCCTCACTGTTCGCGAAAACACGAATCTAGAAGATGCCGCCAGGCTACTGCTGGAAACAAAGTATCGT CGGCTGCCTGTGGTTGATGCCGATGGCAAGCTGGTAAGAATTCTCGTGTTCTCGAAAACTGTTACTCGCAAGTCCTTATTCACTCAATTCGTTTACCAAG GTTTTGATCCATTCTATCTCACATTTCCAAAGGTCGGACTCATTACACGAGGAACCGTGGTCAGAGCTGCGTTGCAGATAAAGCGCGAGACTGCAAGGTA G
AA sequence Show only first row Show all	>Lus10002834 pacid=23158682 polypeptide=Lus10002834 locus=Lus10002834.g ID=Lus10002834.BGIv1.0 annot-version=v1.0 MAAASSTCFTSVINNHSPSPLLSLLPSAFTLNSSCRPPPPPQLRRLRFSYRQLPRVVVALGSLANSAPARNGTYKVGDFMTRKDRLFVVKPSTSVDEALE VIVEKRVTGFPVIDDQWNLVGVVSDYDLLALDTISGGNDNDSNLFPDVDSTWKTFNEIQKLVGKNHGKVVGDLMTPNPLTVRENTNLEDAARLLLETKYR RLPVVDADGKLVRILVFSKTVTRKSLFTQFVYQGFDPFYLTFPKVGLITRGTVVRAALQIKRETAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	0	1
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	2.4	0.9088
AT5G42200			RING/U-box superfamily protein...		Lus10034551 [exp]	2.6	0.8819
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	2.6	0.9183
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	6.5	0.8929
AT2G22590			UDP-Glycosyltransferase superf...		Lus10012726 [exp]	6.6	0.8697
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	7.5	0.8716
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	8.5	0.8821
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	8.7	0.8873
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	10.5	0.8761
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	10.8	0.8802

Compare expression of checked genes

Lus10002834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.