Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53390 96 / 2e-23 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 89 / 4e-21 O-acyltransferase (WSD1-like) family protein (.1) AT2G43255 86 / 5e-21 unknown protein AT1G72110 84 / 2e-19 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT3G49200 83 / 5e-19 O-acyltransferase (WSD1-like) family protein (.1) AT5G37300 81 / 2e-18 WSD1 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 79 / 1e-17 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 79 / 2e-17 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 77 / 8e-17 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 75 / 4e-16 O-acyltransferase (WSD1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027887 [exp] 290 / 2e-97 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 211 / 5e-70 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10019840 [exp] 200 / 1e-65 AT3G49200 155 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 81 / 3e-18 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 76 / 1e-16 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 65 / 1e-12 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 63 / 5e-12 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10030257 [exp] 62 / 9e-12 AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 47 / 2e-06 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304600 [exp] 192 / 1e-59 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 99 / 1e-24 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 68 / 1e-13 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 65 / 1e-12 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 65 / 1e-12 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 59 / 2e-10 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 56 / 1e-09 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 55 / 4e-09 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 49 / 3e-07 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002836 pacid=23158681 polypeptide=Lus10002836 locus=Lus10002836.g ID=Lus10002836.BGIv1.0 annot-version=v1.0 ATGGCAGTGCCGAAAGCGGAGATTTCGAACATGATGAAGAACAACTCAAGACCAAGGTGGGGGAACAAGGTTGGTATGGTACTGTTACCAGTGAAATACT ATCCGCAGACTGAAGGATTCGATCCGTTGGAGATTGTTAGGAGGCCTAGGAAGATGATCGATAGGAAGAAGTCGTTGGAAGCTTATTTCTCGTACAATGT CGGCTACATGATAATGTACATGTTCGGACCCAAGGTCGCAACCATGTGTAACTACAATCTAATGTGCAACTCGACGTTTATGATCTCGAACATGGTCGGG CCGAAAGAGGAGATCACCATTGGGAATCCGATCAACTTCATCAGAGTCGATACAACGTGCCTTCACCTGTCATCAATGCACACGGTGAGCTATGCAGGAA GAGCTGAAATGCAGGTATTGGTGGCCAAAGACATCATTCCTGACCCTGAATTCGTGGCTAAGTGCTTTGAAGATTCTTTGCTCGAGATGAATATTGCTGC CTAA
AA sequence Show only first row Show all	>Lus10002836 pacid=23158681 polypeptide=Lus10002836 locus=Lus10002836.g ID=Lus10002836.BGIv1.0 annot-version=v1.0 MAVPKAEISNMMKNNSRPRWGNKVGMVLLPVKYYPQTEGFDPLEIVRRPRKMIDRKKSLEAYFSYNVGYMIMYMFGPKVATMCNYNLMCNSTFMISNMVG PKEEITIGNPINFIRVDTTCLHLSSMHTVSYAGRAEMQVLVAKDIIPDPEFVAKCFEDSLLEMNIAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10002836 [exp]	0	1
					Lus10042299 [exp]	3.5	0.8452
AT5G45650			subtilase family protein (.1)		Lus10020458 [exp]	4.9	0.8562
AT5G66440			unknown protein		Lus10014287 [exp]	8.7	0.8113
AT3G63480			ATP binding microtubule motor ...		Lus10035344 [exp]	9.2	0.8599
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	14.4	0.8215
AT3G20395			RING/U-box superfamily protein...		Lus10040073 [exp]	15.8	0.7851
AT4G18425			Protein of unknown function (D...		Lus10013974 [exp]	16.5	0.7506
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	20.5	0.8500
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	26.3	0.7627
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009652 [exp]	28.4	0.8320

Compare expression of checked genes

Lus10002836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.