Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 328 / 6e-107 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45560 320 / 6e-104 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33720 316 / 5e-102 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 309 / 1e-99 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT5G07990 303 / 3e-97 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 303 / 3e-97 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 281 / 9e-89 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 278 / 2e-87 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12320 259 / 3e-80 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 251 / 3e-77 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021137 [exp] 877 / 0 AT3G52970 387 / 6e-130 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021136 [exp] 606 / 0 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10025749 [exp] 604 / 0 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021135 [exp] 349 / 6e-115 AT3G52970 634 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10008936 [exp] 343 / 1e-112 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10029930 [exp] 339 / 6e-111 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10028852 [exp] 322 / 1e-104 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 314 / 2e-101 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 313 / 3e-101 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094700 [exp] 580 / 0 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 356 / 2e-117 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G030100 [exp] 355 / 4e-117 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 352 / 5e-116 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 350 / 1e-115 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029200 [exp] 349 / 5e-115 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.002G150200 [exp] 348 / 1e-114 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 347 / 2e-114 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 346 / 6e-114 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 342 / 2e-112 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002839 pacid=23181307 polypeptide=Lus10002839 locus=Lus10002839.g ID=Lus10002839.BGIv1.0 annot-version=v1.0 ATGGCAATTCAAAACCTCTTCCTCCCATGTTTAATCCTGTCCTTAACACTCCTCTTCATCTTCTTCTCCCTCCGCCGCAAAAAGAAAACGGCGCCGTACC CACCTGGCCCACGTGGCTGGCCAATCATCGGTAACTTACTCGACCTCGGCGAAATGCCCCACCGCACCCTAACCCAAATGCGCCAAAAATACGGCGACGT CGTTTGGCTCAAATTCGGCGCCACCAACACCTTAGCAATCCTCTCCGCAAAATCCGCCGCCGAGGTATTCAAAAACCATGACATCAACTTCATGAACCGC ACCCTAACCGAAACGACCAAATCCCATGACTACCACGTGGGCTCACTCGGTCTCTCCCCCTACGGCACCTACTGGCGTGTCCTCCGCCGTCTCGTCACCG TGGACATGCTTGTCCTCCGTAAAATCAACGACAGCGCCTCCGTAAGGAGGCGCAACGTCGACAACTTAATACAATGGGTGTCGGACGAAGCCCGGAACTC ACGTGAGATGCACGTGGCCAGGTTCGTTTTTGACACCACGTTCAACCTGCTGGGGAACTTGTTGCTGTCTAGGGACCTTGTAGGGTCGGATTCGGACGAG GCGGACCGGTTTTTCGAGGCGATGATGGGGCTGATGGAGTGGAGCGGGCATGCCAACGTGGCGGATTTTTTTCCCTGGCTGAGGTGGCTTGACCCGCAAG GGTTGAGGAAGAAGATGGATCGGGATTTGGGTATTGCTCTTGGGATTGCTTCTAAGTTTGTGAAGGAGAGGATTAGAGATGGTGAAGAGAGTAAGAAGAA GAAATTACAAGGTGATGATAAAAGGGATTTTCTTGATGTGATGCTTGAGTTCAGGGGTAACGGTAAAGATGAGCCTGATAGTTTCACTGAGCATCAAATC AATATCTTTCTCTTGGAGATATTTTTGGCGGGGTCGGAGACGACTAGTAGCACGACGGAATGGGCGATGACGGAGTTGCTACGAAACCCGGAGTCAATGG CCAAACTCAAAACCGAACTAGACAGAGTGGTCGGACCGAATCGAAAAATGGAAGAGTCTGATATAGACGACTTACCGTTCCTTCAGGCGGTCGTGAAAGA GACTTTCAGACTACACCCGCCGCTCCCGTTGTTGGTGCCGCGGCGCGTGGATGAAGACGCGCTTTTCATGGGATACCACGTGCCCAAGGGGACTCAGGTG TTGGTGAACGCGTGGGCGATCGGGCGGGACCCGGAAGCGTGGGGAGAAGAGGATGACCCGTGGGCTTTCCGGCCCGAAAGGTTTTTGGGCTCGAAGGTGG ACTTTAGAGGACAACACCATCAGCTGATTCCGTTCGGAGCGGGTCGTCGGGTTTGCGCCGGGTTGTTGCTGGCCCACCGCATGCTTCACTTGGTTTTGGG GACGTTGGTTCATGAGTTTAACTGGGAAGTGAGCGTTGATCCGAAAGATATTGATATGGATGACCGGTTGGGAGTTACAATGAGGAAATTTGAGCCGTTG ATGGCCATGCCCAAGAAGATTGTGAGGGTGTGA
AA sequence Show only first row Show all	>Lus10002839 pacid=23181307 polypeptide=Lus10002839 locus=Lus10002839.g ID=Lus10002839.BGIv1.0 annot-version=v1.0 MAIQNLFLPCLILSLTLLFIFFSLRRKKKTAPYPPGPRGWPIIGNLLDLGEMPHRTLTQMRQKYGDVVWLKFGATNTLAILSAKSAAEVFKNHDINFMNR TLTETTKSHDYHVGSLGLSPYGTYWRVLRRLVTVDMLVLRKINDSASVRRRNVDNLIQWVSDEARNSREMHVARFVFDTTFNLLGNLLLSRDLVGSDSDE ADRFFEAMMGLMEWSGHANVADFFPWLRWLDPQGLRKKMDRDLGIALGIASKFVKERIRDGEESKKKKLQGDDKRDFLDVMLEFRGNGKDEPDSFTEHQI NIFLLEIFLAGSETTSSTTEWAMTELLRNPESMAKLKTELDRVVGPNRKMEESDIDDLPFLQAVVKETFRLHPPLPLLVPRRVDEDALFMGYHVPKGTQV LVNAWAIGRDPEAWGEEDDPWAFRPERFLGSKVDFRGQHHQLIPFGAGRRVCAGLLLAHRMLHLVLGTLVHEFNWEVSVDPKDIDMDDRLGVTMRKFEPL MAMPKKIVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	3.2	0.9739
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	3.7	0.9769
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	4.0	0.9785
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	6.6	0.9818
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	7.2	0.9799
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	7.7	0.9778
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	9.4	0.9712
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	9.5	0.9778
					Lus10014739 [exp]	10.6	0.9633
AT2G01340		At17.1	unknown protein		Lus10016709 [exp]	12.0	0.9694

Compare expression of checked genes

Lus10002839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.