Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04550 281 / 2e-87 Protein of unknown function (DUF668) (.1) AT5G51670 144 / 3e-37 Protein of unknown function (DUF668) (.1) AT3G23160 143 / 8e-37 Protein of unknown function (DUF668) (.1) AT1G34320 77 / 1e-14 Protein of unknown function (DUF668) (.1) AT1G30755 76 / 3e-14 Protein of unknown function (DUF668) (.1) AT5G08660 72 / 4e-13 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021138 [exp] 903 / 0 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 162 / 4e-43 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 139 / 6e-35 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 137 / 1e-34 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 136 / 4e-34 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 122 / 1e-29 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 120 / 8e-29 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 77 / 2e-14 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 65 / 1e-10 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117000 [exp] 381 / 3e-126 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 308 / 2e-97 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 295 / 2e-92 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 149 / 2e-38 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 147 / 1e-37 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 143 / 4e-37 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 114 / 4e-27 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 77 / 2e-14 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 74 / 9e-14 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 74 / 1e-13 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10002840 pacid=23181313 polypeptide=Lus10002840 locus=Lus10002840.g ID=Lus10002840.BGIv1.0 annot-version=v1.0 ATGGTGGCGGATTCGTCATGGCTGGCCAACTTCATCCGCCACTCGAGGAAACTTCCGGCGCCGGAGTCCGAACGAGCGATAATCGGAGTCCTCTCTTTCG AAGTGTCCAAGTTAATGTCCAAAGTGATCAACCTATGGCATTTCCTCAGCGACGAAAACGAGACACGCACCTTACGCCAGGATATCGCCAACACGATTGG AGTCCAAATGCTGGTCTCCGACGACGGCGATTACCTCATGGAACTCGCACTCAACGAGATCCTCCAAAATTTCATCGAGGTCTCCGTCTCAGTCTCCCAA CTCGCAACCAAATGTGCCCACCCTCAGTTCAAGCGGTTCGACCGGTTCGTAACCAGTCCAGTTCAGAGCCACCTGGAGTGGTACGGTTGGGAGTACAGAC CGAAGAAGATGGAGAGGAAAGTGAAGAAGATGGAGCGATTCGTCCGGGTGATGGCGGTGCTAGCTCAGGAGCTTGATGTGCTCGCTGAGCTGGAAAGGTC ACGCCGGAGAATGATGAGTAATCCGAAAACCGATCCGATTAAATTGCTCGAGTCTCAGCAGAGGGTCCTCTGGCATCAATCGGAGATTCGAAACCTCAGA GCAGTTTCTCCCTGGGTTAGATCTTATGATTATACCGTCCGGCTACTCGTCCGATCGCTCCTCACGATTCTCGAGAGGATCAAAATCGTGTGTCACATTA ACCAAATTGTGTTCAATTTCAAATCTCGCAGTCTCCAACGGCCTATTCTGGATAGGAGCAGGTCCATGTCATCGATAACGCAATCCTCGTCCGTACATCC TTCTCCGGGTTTCTATATCCCTGGATCGAACAAGTGTAGATTCAGAGCCAAACGGGATGAAATTAATTCGCCGCCGACAACGACGATGATGTCTCGAGGG TGCCGCCACCATCGGAGGTCCAGAACAAGGAGGCTAAGCGACGTCGGCGCGCTGACAGGGTGCACGGAGACACCGGATCGGGACCGGAAATCCTCTGTAC GGCCGAGTTGCGCGGTGATCGGAAGCTCCCTCCGGCATCCAACGCCGACGAGGATGGAGAATTCAATCGACGATGGCGAAGAAGATAAATTAGGTTATCA CAATCGAGTGATCTATTCGAAACTCGCGGTGAGTTCGGGATCGAAACGGCGGATGCTAATCAGTCCGGAGCCGTCGACGCTCGGCGACGCCGGATTAAAC CTTCACTACGCGAATCTGATCGTGGCGGTGGAGAAGATGGCTTCGGCGGTTAGTGAGATCGACGAAGAATCGAGGGATAGTTTGTACGGGATGCTGCCGT CGAGCGTTAAGAGTGTAGTGAGGAAGAGGCTGAGGGATTATCACGGGAGGAGTGGTGGAGGAGGATACGACGCGGCGGTGGCGGCGGGGTGGAGGCACAC GGTGGCGCGGGTGCTAGAGTGGCTGTTGCCGTTGGCGCACAATATGCTGAGGTGGCAGGCGGTGAGGAATTTCGAGAGGGACCACCAAGAGGCGGACTCG AAGACGCACGTGTTGTTAGTCCAGACGCTTTATTTTGCGGACCGGCCCAAAACGGAGGCCGCTATTGTTGAGCTTATTGTTGGGCTGGACTATTTGTATA GAGTTGGTAAGAGGCTTGATGAAATGTCCTTTTGA
AA sequence Show only first row Show all	>Lus10002840 pacid=23181313 polypeptide=Lus10002840 locus=Lus10002840.g ID=Lus10002840.BGIv1.0 annot-version=v1.0 MVADSSWLANFIRHSRKLPAPESERAIIGVLSFEVSKLMSKVINLWHFLSDENETRTLRQDIANTIGVQMLVSDDGDYLMELALNEILQNFIEVSVSVSQ LATKCAHPQFKRFDRFVTSPVQSHLEWYGWEYRPKKMERKVKKMERFVRVMAVLAQELDVLAELERSRRRMMSNPKTDPIKLLESQQRVLWHQSEIRNLR AVSPWVRSYDYTVRLLVRSLLTILERIKIVCHINQIVFNFKSRSLQRPILDRSRSMSSITQSSSVHPSPGFYIPGSNKCRFRAKRDEINSPPTTTMMSRG CRHHRRSRTRRLSDVGALTGCTETPDRDRKSSVRPSCAVIGSSLRHPTPTRMENSIDDGEEDKLGYHNRVIYSKLAVSSGSKRRMLISPEPSTLGDAGLN LHYANLIVAVEKMASAVSEIDEESRDSLYGMLPSSVKSVVRKRLRDYHGRSGGGGYDAAVAAGWRHTVARVLEWLLPLAHNMLRWQAVRNFERDHQEADS KTHVLLVQTLYFADRPKTEAAIVELIVGLDYLYRVGKRLDEMSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	0	1
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Lus10041789 [exp]	2.0	0.6872
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	2.0	0.7264
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10027324 [exp]	7.7	0.5876
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	10.0	0.6818
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10020834 [exp]	16.9	0.6401
AT1G26380			FAD-binding Berberine family p...		Lus10023374 [exp]	25.3	0.6296
AT5G25940			early nodulin-related (.1)		Lus10033027 [exp]	27.9	0.6514
					Lus10019810 [exp]	33.5	0.6546
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10015505 [exp]	33.7	0.6273
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	34.1	0.6468

Compare expression of checked genes

Lus10002840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.