Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 134 / 2e-35 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 115 / 5e-29 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 113 / 4e-28 AT-hook AT hook motif DNA-binding family protein (.1.2) AT4G25320 114 / 7e-28 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 112 / 8e-28 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT5G51590 110 / 2e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 105 / 3e-25 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 106 / 5e-25 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 104 / 2e-24 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 97 / 2e-22 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003371 [exp] 497 / 4e-176 AT4G12080 166 / 8e-48 AT-hook motif nuclear-localized protein 1 (.1) Lus10015027 [exp] 125 / 1e-32 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 120 / 1e-30 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 119 / 5e-30 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10031696 [exp] 119 / 8e-30 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10004022 [exp] 117 / 2e-29 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10011067 [exp] 115 / 1e-28 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10000315 [exp] 115 / 1e-28 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10004318 [exp] 114 / 3e-28 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070000 [exp] 129 / 3e-34 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G115800 [exp] 127 / 2e-33 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 127 / 3e-33 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 127 / 5e-33 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G148600 [exp] 125 / 2e-32 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.004G189200 [exp] 121 / 6e-31 AT2G45850 147 / 4e-41 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 117 / 1e-29 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.003G090900 [exp] 117 / 2e-29 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 115 / 4e-29 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.001G143500 [exp] 115 / 1e-28 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain CL0615 [flax] [poplar] PF02178 [flax] [poplar] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Lus10002841 pacid=23181306 polypeptide=Lus10002841 locus=Lus10002841.g ID=Lus10002841.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGGAAAGCACCGTCTCCGGCTCACTCGCCGGAAACTCCGACACCGACTCACCTCCCCCAGTCAGCAGCCTCAACGTCGCACAACCACCTC CCCATCACCACCACCATCAACTACCCATGTCGTCATCTGTAACTCCCTCTCCACCAAACGACGTCGTTTCAGCGCCCAACGATTTCCTCACCAAGAAGAA ACGCGGGAGGCCGAGAAAGTATGACTCGGACGGGAACCTCCGAGTTACACCGGCGTCGTTTCATCATCATCATTATCATCCCAATAACAACAACTCATTG GCTCCCCCACCGGGTTTCTATATGTCGCAGCAGCACGCCATGTCAGCGGTTGACTACGGGCATGACCAGCAGCAGCGACGGATGGCATTTCCGTCGGCGA GACGTGGACGTGGGAGGCCTGGTGGCTCCGGCGGCAGCTGGCAGGTGCTCGCTTCTTTAGATTGTGAAGGAGAGTTGTTTGAAAACACCGCAGGAGGCGA CTTCACTCCTCACGTGCTCACTGTAAACATCGGAGAGGATGTAACAGGTAAAATGATGTCATTGTCTCAGAAGGGCTCTAGAGGTATATGTGTTCTCTCG GCCAACGGCGCCGTTTCGAACGGGAGGTATGAAATACTGTCACTGACGGGATCATTCCCGGCAGCAGCTGATTATCAAAGTAATGGAGGTTGTACTAGGA ACAGAACAGGTGGGCTTAGTGTCTCCTTAGCTAGCTCTGACGGCCGTGTAATCGGCGGCGGGGTTGCCGGACTTCTCTTGGCCGCCAGTCCTATCCAGAT GGTAGTGGGAAGCTTCACGCCCAGTGGGTATAATAAGGTCCAAAAGCGGAAGTACAATCGCGAGCAACATCCACCGGCGCCGGCAGCAATATCTCAACCG GCCAATGTTCCGCAAGTTGGTTTTACCATACAGCCCCTAGTATCTCCTCCTCCAACAACTACTGGATCGTCATTGCCAGGGCAGACTAGTCATTCCAATG CGGCAGGGGCAGGGCATCAAGAACACAACAATAAAGTTGATGGAAAACAAACGACGACGATGTTTCACCATCCTATGAATAATACCCGCCAAGATCACCA CGGAGGTTGGAATGGAACGATGAATTCGTCAACTTCGTCAATCCACAGACAGTCCCCTGACATCAACGTTTCAGCTCCTAGTGATGATGATGTTCCTGCT GGTAATAATTAA
AA sequence Show only first row Show all	>Lus10002841 pacid=23181306 polypeptide=Lus10002841 locus=Lus10002841.g ID=Lus10002841.BGIv1.0 annot-version=v1.0 MEEKESTVSGSLAGNSDTDSPPPVSSLNVAQPPPHHHHHQLPMSSSVTPSPPNDVVSAPNDFLTKKKRGRPRKYDSDGNLRVTPASFHHHHYHPNNNNSL APPPGFYMSQQHAMSAVDYGHDQQQRRMAFPSARRGRGRPGGSGGSWQVLASLDCEGELFENTAGGDFTPHVLTVNIGEDVTGKMMSLSQKGSRGICVLS ANGAVSNGRYEILSLTGSFPAAADYQSNGGCTRNRTGGLSVSLASSDGRVIGGGVAGLLLAASPIQMVVGSFTPSGYNKVQKRKYNREQHPPAPAAISQP ANVPQVGFTIQPLVSPPPTTTGSSLPGQTSHSNAAGAGHQEHNNKVDGKQTTTMFHHPMNNTRQDHHGGWNGTMNSSTSSIHRQSPDINVSAPSDDDVPA GNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10002841 [exp]	0	1
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031903 [exp]	2.4	0.9427
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	4.2	0.9466
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10018004 [exp]	7.0	0.9310
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	8.5	0.9309
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	11.8	0.9394
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	12.7	0.9406
					Lus10041915 [exp]	16.5	0.9196
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	16.9	0.9347
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	17.1	0.9203
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	18.5	0.9339

Compare expression of checked genes

Lus10002841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.