Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10020 126 / 6e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003372 [exp] 239 / 3e-82 AT3G10020 147 / 2e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014300 [exp] 140 / 2e-43 AT3G10020 100 / 2e-27 unknown protein Potri.015G106700 [exp] 40 / 6e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002842 pacid=23181316 polypeptide=Lus10002842 locus=Lus10002842.g ID=Lus10002842.BGIv1.0 annot-version=v1.0 ATGAAGCTGATCAACGACAAGGAAGAGAAAGTGGTGATAAGAGCAGTGAGCCACGACGAGGAAGGCAGGAAGAGGGTGGACAAAACCGAGCTCCACGCTC ACAACATCGACACAATCAAACACGTGGAGAAGAAGCTAACGGACAAGGGGGTCCACCGCATGGACCGCCACCCGGTCGACGGCGTGGGGATTCGTAAGCC GGCTTCGAAACTCGGCCACGGCGGGAAGTACACATGGGAGGGGCCCGGCAGGCTGGCGGAGAACGAGCTCGAACCCGTTCCCGCGGCAATTGATGATAAG GATCCGAACTATGTGGATGAGGAAGAGGAAGGAAAGATACTGAGAGGGGAGAAGAGTGACGTGGCGGGTTTGGTGGTTGGGGAAGTTGAGGTTGCTAAGG TGGCGGCGGAGGAGAGGGATGGGGTTGGTCGGGTTGATTTTGATCCTAAGTTGGTTTAG
AA sequence Show only first row Show all	>Lus10002842 pacid=23181316 polypeptide=Lus10002842 locus=Lus10002842.g ID=Lus10002842.BGIv1.0 annot-version=v1.0 MKLINDKEEKVVIRAVSHDEEGRKRVDKTELHAHNIDTIKHVEKKLTDKGVHRMDRHPVDGVGIRKPASKLGHGGKYTWEGPGRLAENELEPVPAAIDDK DPNYVDEEEEGKILRGEKSDVAGLVVGEVEVAKVAAEERDGVGRVDFDPKLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10020			unknown protein		Lus10002842 [exp]	0	1
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10041615 [exp]	1.4	0.9165
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	2.0	0.9397
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	3.5	0.8976
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	6.9	0.8779
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	7.5	0.8858
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	8.8	0.9110
AT3G02125			unknown protein		Lus10013196 [exp]	9.0	0.8751
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	9.2	0.9071
					Lus10005955 [exp]	10.5	0.8578
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	10.5	0.9046

Compare expression of checked genes

Lus10002842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.