Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52960 276 / 1e-94 Thioredoxin superfamily protein (.1) AT1G65980 192 / 3e-62 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT1G60740 188 / 6e-61 Thioredoxin superfamily protein (.1) AT1G65970 187 / 2e-60 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G65990 144 / 4e-40 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1) AT3G06050 110 / 8e-30 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003373 [exp] 404 / 4e-145 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1) Lus10023662 [exp] 178 / 1e-56 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023180 [exp] 176 / 4e-56 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10015077 [exp] 175 / 1e-55 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10021932 [exp] 108 / 1e-28 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1) Lus10041218 [exp] 88 / 4e-20 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1) Lus10018342 [exp] 40 / 0.0006 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102100 [exp] 309 / 1e-107 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.018G083500 [exp] 187 / 3e-60 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2) Potri.001G423500 [exp] 186 / 5e-60 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.019G024000 [exp] 100 / 4e-26 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10002843 pacid=23181324 polypeptide=Lus10002843 locus=Lus10002843.g ID=Lus10002843.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTCTCTCTGTCTCCAGAATCCTCCTCTCCTCACCCACCACCGTCGCCGCCACCACCAAATCTCTCCTCCCTTCCATCGCAATCTCCGCCA ACCTCACTCCCTTCTCCTCCCCCAAACTCAATCTCCGATTCAACCGCACCAAACTCTCCAAACGATTCTCCGCCGTTCCCTCAATCTCCGCCTCGATCTC CGAAGGAGATCGCCTCCCCGACGCCACGCTATCCTACCTAGACGCCGACAACGAGGTCCAGACCGTGACTGTCTCCTCCCTCACTGCCGGCAAGAAGGCC ATCCTCTTCGCCGTCCCGGGGGCGTTCACCCCGACCTGCTCGCAGAAGCACCTCCCGGGGTTCGTGGAGAAGGCTGCGGAGCTGAAATCGAAAGGAGTGG ACACGATCGCCTGCGTGTCGGTGAACGATGTGTTCGTGATGAAGGCGTGGAAGGAGAATTTGGGGATTAAGGATGAAGGTGATGTTTTGCTGCTCTCCGA TGGGAATCTGGAGTTCACTAAGGCGATTGGGTGCGAGCTGGATCTGAGCGATAAGCCGGTGGGGCTTGGGGTTAGGTCTAGGAGGTATGCGTTGCTGGCG GAGGACGGCGTCGTTAAGGTGCTGAATTTGGAGGAAGGCGGCGCGTTTACTTCAAGCGGGGCTGAGGATATGCTCAAGGCACTGTGA
AA sequence Show only first row Show all	>Lus10002843 pacid=23181324 polypeptide=Lus10002843 locus=Lus10002843.g ID=Lus10002843.BGIv1.0 annot-version=v1.0 MASSLSVSRILLSSPTTVAATTKSLLPSIAISANLTPFSSPKLNLRFNRTKLSKRFSAVPSISASISEGDRLPDATLSYLDADNEVQTVTVSSLTAGKKA ILFAVPGAFTPTCSQKHLPGFVEKAAELKSKGVDTIACVSVNDVFVMKAWKENLGIKDEGDVLLLSDGNLEFTKAIGCELDLSDKPVGLGVRSRRYALLA EDGVVKVLNLEEGGAFTSSGAEDMLKAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52960			Thioredoxin superfamily protei...		Lus10002843 [exp]	0	1
AT3G52960			Thioredoxin superfamily protei...		Lus10003373 [exp]	1.0	0.9678
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	1.7	0.9383
AT2G31670			Stress responsive alpha-beta b...		Lus10017873 [exp]	4.2	0.9207
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027303 [exp]	4.5	0.9237
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	4.5	0.9422
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025333 [exp]	4.9	0.9182
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039008 [exp]	5.7	0.9145
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	8.7	0.8982
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	8.9	0.9353
AT3G11690			unknown protein		Lus10021243 [exp]	9.5	0.9069

Compare expression of checked genes

Lus10002843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.