Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42820 334 / 2e-115 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G27650 325 / 9e-112 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT1G10320 134 / 4e-35 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G44785 105 / 1e-28 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G16260 42 / 0.0004 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G30480 41 / 0.0009 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003375 [exp] 502 / 0 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10008648 [exp] 434 / 6e-154 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10009389 [exp] 351 / 2e-121 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020540 [exp] 333 / 1e-115 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2) Lus10038139 [exp] 137 / 4e-36 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10010687 [exp] 63 / 9e-11 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116700 [exp] 392 / 1e-137 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.004G188900 [exp] 351 / 1e-121 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.005G258000 [exp] 335 / 7e-116 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.002G003000 [exp] 318 / 3e-109 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 125 / 3e-36 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G228600 [exp] 132 / 4e-34 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10002845 pacid=23181315 polypeptide=Lus10002845 locus=Lus10002845.g ID=Lus10002845.BGIv1.0 annot-version=v1.0 ATGGCGGAGCACTTGGCTTCGATATTCGGAACGGAGAAGGACAGAGTCAACTGCCCCTTCTATTTCAAGATCGGAGCATGCCGCCACGGAGACCGCTGCT CCAGGCTCCACACCAAGCCCAGCATCAGTCCCACCATCGTCCTCGCAAACATGTACCAGCGCCCCGACATGCTCACTCCCGGCGTCGACCCTGCTTCCCA ATCCCAGGCTCTCGACCCTGGCAAAATCCAAGATCACTTCGATGATTTCTACCAGGACTTGTTCGAGGAGCTCAGCAAGTACGGCCACATCGAGAGCTTG AATATCTGCGATAACCTTGCCGACCACATGGTTGGGAATGTTTATGTTCAGTTTAGGGAGGAAGATCATGCTGCCGCTGCTCTCCAGAGCCTAACTGGAA GGTTCTATGCTGGGCGTCCAATCATTGTCGACTTCTCTCCCGTGACGGATTTTCGTGAGGCAACATGTAGGCAGTATGAGGAGAACGTATGCAACAGAGG TGGCTACTGCAACTTCATGCATCTTAAGAAGATTAGCAGGGAGTTGAGGAGGCAACTATTCGGGAAGAACAACAGGAGAAGACACAGCCGGAGCAGGAGC CCTCAGAGGCATCGAGGCTATGACGATCGTCCTCACGGTGGACGCAGTTTAGGTAGAAGAGACGATGACAGGAGGGGTGGTGGCGGTGGGAGGAGGCCTG GGAGCAGAAGTCCTCCTAGACGAAGGGGAGGAAGGAGCAGAAGCCCTGTAGGGAGGAGGAATCGAAGCCCCCCTGCAAGAGAGAATAGTGCCGAGAGAAG GGCTAGAATCGAGCAATGGAACAGGGAGAAAGAGCAAGCGGAGCCTGATGTTAGCCGGGATGCTGCTGTTGATGATAGGAACGCCAATGGTGCTGGCTTT CCAAACAATGGAAGCCCTGCAGATGATCGCCGCTCTCAGTAG
AA sequence Show only first row Show all	>Lus10002845 pacid=23181315 polypeptide=Lus10002845 locus=Lus10002845.g ID=Lus10002845.BGIv1.0 annot-version=v1.0 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTIVLANMYQRPDMLTPGVDPASQSQALDPGKIQDHFDDFYQDLFEELSKYGHIESL NICDNLADHMVGNVYVQFREEDHAAAALQSLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGKNNRRRHSRSRS PQRHRGYDDRPHGGRSLGRRDDDRRGGGGGRRPGSRSPPRRRGGRSRSPVGRRNRSPPARENSAERRARIEQWNREKEQAEPDVSRDAAVDDRNANGAGF PNNGSPADDRRSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002845 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	1.4	0.9237
AT5G08450			unknown protein		Lus10019217 [exp]	2.4	0.9200
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	3.2	0.9332
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10020324 [exp]	4.9	0.8819
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	4.9	0.9195
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	7.5	0.9086
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	8.0	0.8853
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	10.5	0.8998
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	14.3	0.9108
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	16.1	0.8639

Compare expression of checked genes

Lus10002845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.