Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44750 102 / 3e-25 HDT1, HDA3, ATHD2A, HD2A HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) AT5G22650 94 / 1e-21 ATHD2B, HDT2, HDT02, HDA4, HD2B ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2) AT5G03740 82 / 1e-17 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003376 [exp] 207 / 7e-65 AT3G44750 114 / 2e-30 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020542 [exp] 125 / 2e-35 AT3G44750 123 / 3e-36 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10009391 [exp] 119 / 5e-30 AT2G27830 130 / 7e-36 unknown protein Lus10009390 [exp] 108 / 9e-27 AT3G44750 166 / 1e-50 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020543 [exp] 102 / 4e-25 AT5G22650 136 / 1e-38 ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116500 [exp] 124 / 9e-33 AT5G03740 117 / 8e-31 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) Potri.004G188800 [exp] 110 / 7e-28 AT3G44750 122 / 1e-33 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.009G149400 [exp] 108 / 5e-27 AT3G44750 126 / 5e-35 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05285 [flax] [poplar] SDA1 SDA1
Representative CDS sequence Show only first row Show all	>Lus10002846 pacid=23181333 polypeptide=Lus10002846 locus=Lus10002846.g ID=Lus10002846.BGIv1.0 annot-version=v1.0 ATGGTGAATGTGGCTACAGATGGCGCCATTTTGCAGCACAGCTCCTTTCAATTTAGCTTCCAGAGTCGTGTTGAGGTGAAAAGTGGAGATTCTCTTGAAG TTAAGTGTCATGATAACTTCATTTTGCACCTTTCGCAGGCTGCTCTTGGTGAGTGTAAGAAGGACAAAGGAAACGGATCTGTTTGCTTGTATGTGACAAT TGGTGGCAAGAAGCTTGTTCTTGGAACTCTTTCCTCTGAGAACGCTCCTCAGCTGTCATTCGACCTGGTGTTTGAACGAGATTTCCAGTTGTCTCATAGT GGAAAAAGTGGGAGTGTTCACTTCATTGGCTATAAAGCTCCTCAAGCTGAATATCCTTTTTCTGCTGCTCAGTATATCGTTACCCAGCCACTTGCTATTA TATTTCCTTTTGTGTATTTGCTCTCTTGTGCACCTGTCTCTCACAAGAGTGAAATTAAACCTGCGAAAGAGGAAAAGGAGAAACCCAGTTCAAGTGGGAC TAAGAAAGTGAAAATTGTGGAACCAAATAAGGATGACACAACTGATGAGGAAAGTGATGAAGATGACGATGACCTGTCAGACGATGATGATCAAGCCGAT GACGATAAGGGTAAGTTGATCAAAGCTGCAAGTTCAAGTGATGATGAAGACGATGAGGACAGTATCGATGAGGAGGACACTGACGAGGAAGAGGAAGTTA TGGAGAAAAAACCAAAGAAGGATAGTACTAGCAAGAAGAGACCTGGTCCTGAGACATCGAACCCTGTTCCCAACAAGAAGGCCAAGATGGTTACCCCTCA GAAAACTGAAAACTCGATACAATTATCTCTGCAGGTGGCAAGAAGACCAGTGAACACAAAGCAACACCACACCCTGCCAAGCAGGCTGCGAAGACATCTA CCAACAGTGATCCGAAATTACACATTTGCAAGTCGTGCAACAGGCAAGTCACTTACTCCCTTCCCTTTTAATTTGTTGAAATCGAGCCGACTAGGAAACA CCCTCTCATTGTCGTTGCACTTGTTTATCATCCGGCCGGTCGGACAGGTCGTTCGGTACGGATTTCGCTTTGGATTCTCACTCAAAGGCAAAGCACAGCG CTGGGAAGTGAGACGGGTATGA
AA sequence Show only first row Show all	>Lus10002846 pacid=23181333 polypeptide=Lus10002846 locus=Lus10002846.g ID=Lus10002846.BGIv1.0 annot-version=v1.0 MVNVATDGAILQHSSFQFSFQSRVEVKSGDSLEVKCHDNFILHLSQAALGECKKDKGNGSVCLYVTIGGKKLVLGTLSSENAPQLSFDLVFERDFQLSHS GKSGSVHFIGYKAPQAEYPFSAAQYIVTQPLAIIFPFVYLLSCAPVSHKSEIKPAKEEKEKPSSSGTKKVKIVEPNKDDTTDEESDEDDDDLSDDDDQAD DDKGKLIKAASSSDDEDDEDSIDEEDTDEEEEVMEKKPKKDSTSKKRPGPETSNPVPNKKAKMVTPQKTENSIQLSLQVARRPVNTKQHHTLPSRLRRHL PTVIRNYTFASRATGKSLTPFPFNLLKSSRLGNTLSLSLHLFIIRPVGQVVRYGFRFGFSLKGKAQRWEVRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10002846 [exp]	0	1
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10023396 [exp]	2.0	0.8531
AT4G13690			unknown protein		Lus10000756 [exp]	14.2	0.8618
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	14.5	0.8281
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	18.4	0.8215
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	20.6	0.8479
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10003376 [exp]	20.8	0.8232
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10042353 [exp]	26.7	0.8352
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	28.6	0.8403
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	32.0	0.8473
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10028104 [exp]	32.3	0.8466

Compare expression of checked genes

Lus10002846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.