Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38270 380 / 3e-133 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting protein 2 (.1) AT3G54900 108 / 7e-29 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT4G04950 100 / 1e-23 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT3G15660 88 / 4e-21 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) AT2G20270 46 / 8e-06 Thioredoxin superfamily protein (.1.2) AT5G40370 44 / 1e-05 GRXC2 glutaredoxin C2, Glutaredoxin family protein (.1.2) AT5G63030 44 / 1e-05 GRXC1 glutaredoxin C1, Thioredoxin superfamily protein (.1) AT3G21460 41 / 0.0001 Glutaredoxin family protein (.1) AT1G03020 39 / 0.0004 Thioredoxin superfamily protein (.1) AT5G20500 40 / 0.0006 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041501 [exp] 102 / 8e-26 AT3G54900 159 / 4e-49 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10012592 [exp] 101 / 1e-25 AT3G54900 156 / 2e-48 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10018487 [exp] 94 / 8e-23 AT4G04950 280 / 5e-93 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10011187 [exp] 92 / 4e-22 AT4G04950 322 / 8e-110 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10008687 [exp] 78 / 5e-16 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10022844 [exp] 53 / 3e-08 AT4G28730 177 / 3e-57 glutaredoxin C5, Glutaredoxin family protein (.1) Lus10011188 [exp] 53 / 5e-08 AT4G04950 297 / 1e-99 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10042104 [exp] 50 / 1e-07 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10001237 [exp] 50 / 1e-07 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119200 [exp] 405 / 2e-143 AT2G38270 393 / 2e-138 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Potri.014G141200 [exp] 114 / 4e-31 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.004G042200 [exp] 103 / 1e-24 AT4G04950 750 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.011G051400 [exp] 98 / 9e-23 AT4G04950 680 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.003G060600 [exp] 90 / 9e-22 AT3G15660 201 / 7e-67 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Potri.001G347700 [exp] 55 / 1e-09 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2) Potri.002G254100 [exp] 47 / 2e-06 AT4G28730 176 / 2e-56 glutaredoxin C5, Glutaredoxin family protein (.1) Potri.018G133400 [exp] 46 / 3e-06 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Potri.015G078900 [exp] 46 / 3e-06 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 42 / 0.0001 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10002847 pacid=23181329 polypeptide=Lus10002847 locus=Lus10002847.g ID=Lus10002847.BGIv1.0 annot-version=v1.0 ATGGCGGCAATCAATCTAACAACTCCATTACAATCCATCCCCGCTCACCGATTCCTCAATCCACACTCCTCACGAAACATCCCCAATCTCTCGTTCCCAA AACTGTCCATTTCATTGCCTTCTTCAATCTCCTCACGACCTCGTTATACCACATCAGCTGCCCGCCACCGTTCCTTCACCACCGCGGCGGCGGCGCTCAA GAGCCTCTCCGATGCAGAGCTGGTAAAGGTCCCTTCGTCTCAGGACGAGCTTCTGGCGAAATTCCCCAAGGAGTCCGGCGTTTACGCCGTCCATGACGAG AACGACGCCGTCCAATTCGTTGGCATATCGAAGAACATCGCCGCTAGCGTCTACACTCACTCCAAATCCGTGCCGGAGCTTTGCTCCTCCGTTAAGGTTG GGGTAGTAGAAGAGCCAGACAGGGAGGCACTAACCCAAGCGTGGAAATCATGGATGGAAGAACACATAAAGTCCACCGGAAAAGTCCCGCCGGGGAACGA ATCCGGCAACGTCACATGGGTCCGGCAGCCTCCAAAGAAGAAAAAGGCCGACCTCCGGCTAACCCCAGGGCGCCACGTCCAGCTCACGGTAGCTCTGGAG GAGCTGATCGATCGGTTGGTGAAGGAGAACAGAGTGGTAGCATTCATCAAGGGATCTAGGAGCGCGCCAATGTGCGGATTCTCGCAGAAGGTCGTGGGGA TTCTGGAGAGCCAAGGGTTGGATTATGAAAGCGTTGATGTTCTTGATGAGGAGTATAATTGTGGGTTGAGGGAGACGTTGAAGAAGTACAGCAACTGGCC TACGTTTCCGCAGGTGTTCGTCGACGGGGAGTTGCTTGGAGGGTGTGATATTTTGACGGCTATGTATGAGAAAGGGGAGCTTGCTGGATTGTTGAAGAAG AATTGA
AA sequence Show only first row Show all	>Lus10002847 pacid=23181329 polypeptide=Lus10002847 locus=Lus10002847.g ID=Lus10002847.BGIv1.0 annot-version=v1.0 MAAINLTTPLQSIPAHRFLNPHSSRNIPNLSFPKLSISLPSSISSRPRYTTSAARHRSFTTAAAALKSLSDAELVKVPSSQDELLAKFPKESGVYAVHDE NDAVQFVGISKNIAASVYTHSKSVPELCSSVKVGVVEEPDREALTQAWKSWMEEHIKSTGKVPPGNESGNVTWVRQPPKKKKADLRLTPGRHVQLTVALE ELIDRLVKENRVVAFIKGSRSAPMCGFSQKVVGILESQGLDYESVDVLDEEYNCGLRETLKKYSNWPTFPQVFVDGELLGGCDILTAMYEKGELAGLLKK N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	0	1
AT5G44000			Glutathione S-transferase fami...		Lus10027233 [exp]	2.0	0.9165
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	2.8	0.9237
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	3.2	0.9148
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	4.7	0.9043
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	5.3	0.9186
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10016803 [exp]	5.7	0.8990
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	5.8	0.8983
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10037912 [exp]	7.5	0.9140
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	9.2	0.9038
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	9.4	0.9107

Compare expression of checked genes

Lus10002847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.