Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 1287 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027814 [exp] 1308 / 0 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10037223 [exp] 955 / 0 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10036700 [exp] 894 / 0 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 845 / 0 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 253 / 5e-78 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102000 [exp] 1431 / 0 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.016G119300 [exp] 1430 / 0 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.010G034800 [exp] 954 / 0 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10002849 pacid=23181330 polypeptide=Lus10002849 locus=Lus10002849.g ID=Lus10002849.BGIv1.0 annot-version=v1.0 ATGGATGCTTACACGATTCATCTCGCCATGGCGGCTCTAGTCGGAGCCTCATTCGTCGCCGTATCCGCTTACTATATGCACCGCAAAACCCTAGCGCAGC TGCTCGAGTTCGCCAAGGCCGTCGAGAGAGAACGAGAGAAGGCTGATGGCGAAGAGGAGGAGGACGGCGGGGGGGGCAATANNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGGACGTGACGGCCATTTCC GGCGACGGAAATGATAGGCGGAATGGTCAGCTCCACGTCGACGGGATTCCTCACGGCCTGCCGAGTTTGCGCATGCTACCGGAAGGTAAATCGACTGGAC ATACTAAGAGGACTGGAAGTTTCATTAGACCAACTTCCCCAAAGTCTCCCGCTGTTAGTGCATTCGAGAGTGTAGAAGGATCGGACGAAGAAGATAATCT GACTCAAGATATCAAGCTAGACCCCACTTACGTGCTTGCTAATGGAAATGCGGAGAATTTATCAGCGCAAATTAACAACAACGGGGAGCAAATTCCCATC CCTGCTGCAAGCATGATCCGTTCTCATAGTATGTCCGGTGACCTCCATGGTGTCCAGCCTGATCCAGTTGCGGCTGACATTTTGAGGAAAGAGCCTGAGC AAGAAACTTTTGCACGACTTAGAATTAGTCCTACTGAGGTACCATCACCCGATGAAGTGGAGGCTTATTTGGTTCTGCAAGAATGTCTTGAATTGAGGAA AAGATATTTATTCAAGGAAGCAATTGCTCCATGGGAAAAAGAAGTTATTTCTGACCCTAGCACACCGAAACCTAATCTTCAGCCCTTCTTCTATACCACG GAAGAGAAGTCTGATCACTATTTTGAAATGCTAGATGGTGTCATTCATGTCTACCCACATAAAGATTCCAAGGAGGAGCTATTTCCTGTTGCTGATGCAA CAACTTTTTTTACTGATTTGCATCACATACTCAGAGTTACTGCTGCTGGAAACATCAGAACTTTATGTCATCATCGGCTTAATCTTCTGGAACAAAAATT CAACCTCCATTTGATGCTTAATGCCGATAGGGAATTTCTAGCCCAGAAAAGTGCCCCTCATCGTGATTTCTACAATGTCAGGAAAGTTGACACACACGTT CATCATTCTGCTTGCATGAACCAGAAGCACCTCCTAAGGTTTATAAAATCAAAACTGAGGAAGGAGCCTGATGAGGTTGTGATATTTAGAGATGGGACTT ACCTAACGTTGAAAGAAGTTTTTGAGAGTCTGGACTTAACAGGGTACGACCTCAATGTTGATCTTTTGGATGTTCATGCCGACAAAAGCACTTTTCATCG CTTTGACAAGTTCAACCTTAAGTATAATCCTTGCGGTCAAAGTAGACTCAGGGAGATTTTCCTTAAGCAGGATAACCTCATCCAAGGCCGTTTCCTTGCT GAGCTGACAAAGCAAGTGTTTTCTGATCTAGAAGCTAGTAAATATCAGATGGCAGAATATCGAATTTCAATCTATGGCCGGAAACAGAGTGAGTGGGATC AACTCGCTAGCTGGATAGTTAATAATGAGTTATACAGTGAGAACGTTGTTTGGTTAATCCAGCTTCCAAGACTGTACAACATATACAAGGAAATGGGAAT CGTGACATCTTTTCAAAATATCCTTGACAACATATTTATTCCACTCTTCGAGGTTACTGTTGATCCAGATTCGCATCCTCAGTTGCATGTTTTCTTGAAA CAGGTTGTCGGGTTGGACTTAGTTGACGATGAAAGCAAGCCGGAAAGACGTCCCACAAAACACATGCCAACTCCATCTCAGTGGACAAATGTGTTCAATC CAGCTTTTTCATATTACGCTTACTACTGCTACGCCAATCTCTACACCTTAAACAAACTTCGCGAGTCAAAGGGAATGACGACCATCAAATTCCGCCCACA TTCTGGAGAGGCCGGAGACATAGACCACCTTGCTGCAACTTTCCTAACAGCTCAGAATATTGCCCATGGGATCAACTTAAGGAAATCTCCCGTGCTTCAG TATTTGTATTACCTGTCACAGATTGGATTAGCAATGTCTCCTCTCAGCAATAACTCTTTGTTTCTCGACTACCATCGGAACCCTCTTCCTATGTTCTTCC TCCGAGGTCTCAATGTCTCGCTCTCCACCGATGATCCCCTCCAAATCCACTTGACGAAAGAACCCTTGGTTGAAGAGTACAGCATTGCTGCTTCTGTGTG GAAACTTAGTTCTTGTGACCTCTGTGAGATCGCCCGGAACTCAGTCTACCAGTCTGGTTTCTCTCATGCTCTGAAGTCACACTGGATAGGGAAGCAGTAC TACAAAAGAGGACCGGATGGTAATGACATACACAAGACGAATGTCCCTCATATACGACTGGAATTCCGCGAAACGATCTGGAGGGACGAGATGCAACAAG TTTACCTCGGCAAGGCCATGATATCCGAGGATGTCGATAGATGA
AA sequence Show only first row Show all	>Lus10002849 pacid=23181330 polypeptide=Lus10002849 locus=Lus10002849.g ID=Lus10002849.BGIv1.0 annot-version=v1.0 MDAYTIHLAMAALVGASFVAVSAYYMHRKTLAQLLEFAKAVEREREKADGEEEEDGGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDVTAIS GDGNDRRNGQLHVDGIPHGLPSLRMLPEGKSTGHTKRTGSFIRPTSPKSPAVSAFESVEGSDEEDNLTQDIKLDPTYVLANGNAENLSAQINNNGEQIPI PAASMIRSHSMSGDLHGVQPDPVAADILRKEPEQETFARLRISPTEVPSPDEVEAYLVLQECLELRKRYLFKEAIAPWEKEVISDPSTPKPNLQPFFYTT EEKSDHYFEMLDGVIHVYPHKDSKEELFPVADATTFFTDLHHILRVTAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHV HHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLA ELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNIYKEMGIVTSFQNILDNIFIPLFEVTVDPDSHPQLHVFLK QVVGLDLVDDESKPERRPTKHMPTPSQWTNVFNPAFSYYAYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTAQNIAHGINLRKSPVLQ YLYYLSQIGLAMSPLSNNSLFLDYHRNPLPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGKQY YKRGPDGNDIHKTNVPHIRLEFRETIWRDEMQQVYLGKAMISEDVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	0	1
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	4.0	0.8238
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	4.1	0.8294
AT4G09890			Protein of unknown function (D...		Lus10028690 [exp]	6.6	0.6904
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	6.9	0.7701
AT5G04980			DNAse I-like superfamily prote...		Lus10034857 [exp]	13.3	0.7503
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	14.1	0.7644
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	17.1	0.7640
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	20.3	0.7255
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	21.4	0.7688
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	25.2	0.7562

Compare expression of checked genes

Lus10002849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.