Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51820 519 / 0 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) AT2G18950 54 / 1e-07 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) AT3G11945 52 / 4e-07 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003379 [exp] 678 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027815 [exp] 544 / 0 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10000126 [exp] 243 / 8e-79 AT3G51820 253 / 1e-83 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10010614 [exp] 71 / 3e-15 AT1G19880 48 / 8e-08 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10025472 [exp] 53 / 3e-07 AT2G18950 504 / 7e-179 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10006961 [exp] 53 / 3e-07 AT2G18950 519 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10029321 [exp] 50 / 2e-06 AT3G11945 399 / 5e-138 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10016221 [exp] 49 / 3e-06 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102100 [exp] 556 / 0 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.016G119400 [exp] 551 / 0 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.006G197600 [exp] 51 / 9e-07 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.018G090700 [exp] 48 / 1e-05 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10002850 pacid=23181332 polypeptide=Lus10002850 locus=Lus10002850.g ID=Lus10002850.BGIv1.0 annot-version=v1.0 ATGACGTCCCTGCTCAATCCAGCTCTATCCATCGGGTGCTTCAACGGCCGCAGTAGACGACTTCGTTGTCAGCTTTCCGTCTCCATCTCAAATCGTCAGC TTACCGTTAGAGCAGCTGAGAGTGATACAAACGAAGTATTGTTTCGTCTCGCGATAGAAAAACCTCCGGCATCGGATAAAACGCGGGGCAATAGTGGTGG TTCTAGCCTCAATCAACTTCTTGGCATCAGAGGAGCTTCTCAGGAAACGAACAAATGGAAAATTCGTCTTCAATTAACAAAACCAGTGACCTGGCCTCCG TTGGTGTGTGGAGTTGTTTGTGGGGCAGCTGCTTCTGGAAACTTCCACTGGACATTGGAGGATATTGCGAAATCCCTTGTGTGCATGATGATGTCTGGAC CATTTTTAACTGGTTACACACAGACAATGAACGACTATTATGACCGTGACATTGATGCAATCAATGAACCTTATCGTCCGATTCCCTCTGGAGCCATCTC TGAGAATGAGGTTCTTTTTCAAATATGGCTGCTGCTTCTAGGAGGCCTTGGCTTGGCTGGTATATTGGATGTTTGGGCAGGACATGAATTTCCTATAGTT TTGTACCTTGCTTTGGGAGGCTCCTTGGTGTCGTATGTATACTCTGCTCCACCTCTGAAGCTTAAGCAGAATGGTTGGATTGGGAATTTGGCTATGGGGA TAAGCTATATCAGTTTTCCCTGGTGGGCAGGCCAAGCTCTATTTGGGACCCTTACACCTGACATAATTGTTCTGACACTCCTGTACAGCATAGCTGGGCT GGGCGTTGCGGTTGTAAATGACTTCAAAAGCATTGAAGGAGACAGAGCAATGGGCCTCCAGTCAATACCAGTGGCATTCGGTGCTGAAACGGCTAAATGG ATCTGTGTTGGTACAATCAACGTAACTCAAATATCTATAGCCGGTTATCTCCTTGGAGCTGGGAAACCTTACCATGCCTTGGCCTTACTAGCTCTTATAG TTCCACAAGCCTTTTTCCAGTTTGAATATTTCCTCAAAGACCCTGTCAAGTACGACGTCAAATATCAGCAAACGGCGGCTATGGAGACACCGACGGCAGA ACGGCCTAAAAACACCGGTAAAAAGAGCAGGATGTTTCCGAGGTTTGTTGTGATGGAGACCATTGACGGTGGAACGGTATCAAATGGAGTTCGATCAAGT GCAGTGATGAAGAACAAACGGAGAAATGAAGAACAAACGGAGCAGAAGGTGGAGACCGTTAGTCAACGTCAAGTCACAAAGGAAATTGGAGCTTAA
AA sequence Show only first row Show all	>Lus10002850 pacid=23181332 polypeptide=Lus10002850 locus=Lus10002850.g ID=Lus10002850.BGIv1.0 annot-version=v1.0 MTSLLNPALSIGCFNGRSRRLRCQLSVSISNRQLTVRAAESDTNEVLFRLAIEKPPASDKTRGNSGGSSLNQLLGIRGASQETNKWKIRLQLTKPVTWPP LVCGVVCGAAASGNFHWTLEDIAKSLVCMMMSGPFLTGYTQTMNDYYDRDIDAINEPYRPIPSGAISENEVLFQIWLLLLGGLGLAGILDVWAGHEFPIV LYLALGGSLVSYVYSAPPLKLKQNGWIGNLAMGISYISFPWWAGQALFGTLTPDIIVLTLLYSIAGLGVAVVNDFKSIEGDRAMGLQSIPVAFGAETAKW ICVGTINVTQISIAGYLLGAGKPYHALALLALIVPQAFFQFEYFLKDPVKYDVKYQQTAAMETPTAERPKNTGKKSRMFPRFVVMETIDGGTVSNGVRSS AVMKNKRRNEEQTEQKVETVSQRQVTKEIGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	0	1
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	4.9	0.7079
AT4G12010			Disease resistance protein (TI...		Lus10008222 [exp]	12.0	0.7246
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	17.7	0.7163
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	22.1	0.6714
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022365 [exp]	28.0	0.6454
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	34.6	0.6678
AT1G63980			D111/G-patch domain-containing...		Lus10017524 [exp]	34.9	0.6323
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	35.2	0.6737
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	36.3	0.6453
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	49.2	0.6052

Compare expression of checked genes

Lus10002850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.