Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51800 546 / 0 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) AT2G44180 100 / 8e-23 MAP2A methionine aminopeptidase 2A (.1) AT3G59990 98 / 3e-22 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT1G13270 41 / 0.0009 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003379 [exp] 670 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 602 / 0 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 602 / 0 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 276 / 4e-84 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10000403 [exp] 82 / 7e-17 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 66 / 1e-11 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 59 / 2e-09 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10027121 [exp] 46 / 3e-05 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10019308 [exp] 42 / 0.001 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102200 [exp] 605 / 0 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 599 / 0 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.004G084800 [exp] 98 / 4e-22 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.017G133200 [exp] 92 / 3e-20 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.005G137400 [exp] 43 / 0.0003 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10002851 pacid=23181308 polypeptide=Lus10002851 locus=Lus10002851.g ID=Lus10002851.BGIv1.0 annot-version=v1.0 ATGTCCGACGAAGAGAGGGAGGAGGAGAAGGAGTTGGATCTCTCTTCTCCTGAAGTCGTCACCAAGTACAAGAGCGCTGCCGAGATCCTCAACAAGGCCT TGCAATCGGTGGTGAAAGAATGTAAACCAAAGGCAAAGGTCGTTGACCTATGCGAGAAGGGGGATTCATTCATACGGGAGCAAACTGGTAACATGTACAA AAATGTTAAGAAGAAGATTGAAAGGGGAGTAGCATTTCCTACGTGTGTTTCTGTAAACAATGTTGTTTGCCACTTCTCTCCACTTGCCAGTGACGAGAGA GTCTTGGAAGAAGGTGATATGGTTAAAATTGATATGGGATGTCATATAGATGGCTTTATTGCTGTAGTTGCCCATACTCATGTGGTGCACGATGGTGCGG TGGCTGGTCGAGCTGCTGATGTTATTGCAGCTGCTAATACTGCTGCAGAAGTTGCTTTGAGGCTTGTGAGACCTGGGAAAAAGAACAAAGATGTGACTGA GGCCGTTCAGAAGGTCGCTGCAGCCTATGATTGCAAAATCGTGGAGGGTGTCCTAAGTCACCAGCTAAAGCAGTTTGTGATAGATGGAAACAAGGTTATA CTAAGTGTTACCAATCCAGAGACAAGAGTCGATGATGTTGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATTGTTACAAGTACTGGCGAAGGAAAGC CTAAACTGCTAGATGAGAAAGAAACAACCATATATAAGAGAGCTGTCGACAAGAACTATCACCTGAAGATAAAAGCATCTCGGTTCATTTTCAGCGAAAT TAGCCAGAAGTTCCCAATCATGCCTTTCAGTGCCAGGGCATTGGAAGAGAAAAGGGCGAGGTTGGGATTGGTGGAATGCGTGAATCACGAGCTACTCCAG CCTTATCCCGTACTGCACGAGAAGCCGGGTGACTGCGTGGCTCATATCAAGTTCACGGTCTTGTTAATGCCAAACGGTTCGGATAGAATCACTTCTCACC CTCTCCAGGAGTTTCAAGCCACGAAGACAGTAGAAGATCCCGAAATCAAGGCGTGGTTGGCTTTGGGCACCAAGTCGAAGAAGAAGGGTGGAGGCAAGAA GAAGAAAGCCAAGAAAGGCGGTGCTAGAGAAGCAGAAGCCGAACCGATGGACGAATCGACTGATGCTACTCCAGCATCCCAAGCTTGA
AA sequence Show only first row Show all	>Lus10002851 pacid=23181308 polypeptide=Lus10002851 locus=Lus10002851.g ID=Lus10002851.BGIv1.0 annot-version=v1.0 MSDEEREEEKELDLSSPEVVTKYKSAAEILNKALQSVVKECKPKAKVVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPTCVSVNNVVCHFSPLASDER VLEEGDMVKIDMGCHIDGFIAVVAHTHVVHDGAVAGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAVQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVI LSVTNPETRVDDVEFEENEVYAVDIVTSTGEGKPKLLDEKETTIYKRAVDKNYHLKIKASRFIFSEISQKFPIMPFSARALEEKRARLGLVECVNHELLQ PYPVLHEKPGDCVAHIKFTVLLMPNGSDRITSHPLQEFQATKTVEDPEIKAWLALGTKSKKKGGGKKKKAKKGGAREAEAEPMDESTDATPASQA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	0	1
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	2.0	0.9678
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	3.5	0.9579
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	5.1	0.9651
AT1G09640			Translation elongation factor ...		Lus10002536 [exp]	5.9	0.9546
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	7.1	0.9575
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	7.1	0.9630
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10034395 [exp]	7.9	0.9490
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	9.4	0.9545
AT4G15000			Ribosomal L27e protein family ...		Lus10003814 [exp]	9.7	0.9419
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	10.4	0.9470

Compare expression of checked genes

Lus10002851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.