Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08970 461 / 3e-157 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39960 86 / 8e-18 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 86 / 1e-17 DNAJ heat shock family protein (.1) AT4G28480 82 / 5e-17 DNAJ heat shock family protein (.1.2) AT2G20560 81 / 1e-16 DNAJ heat shock family protein (.1) AT3G62600 79 / 1e-15 ATERDJ3B DNAJ heat shock family protein (.1) AT1G80030 79 / 2e-15 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 76 / 3e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G79940 75 / 6e-14 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT3G08910 73 / 7e-14 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003380 [exp] 920 / 0 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017687 [exp] 86 / 6e-18 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 84 / 4e-17 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 84 / 5e-17 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10031336 [exp] 84 / 5e-17 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 84 / 9e-17 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10013981 [exp] 82 / 1e-16 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10030079 [exp] 80 / 7e-16 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10035855 [exp] 79 / 3e-15 AT5G48030 524 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120000 [exp] 663 / 0 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 88 / 2e-18 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 87 / 6e-18 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 79 / 1e-15 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 78 / 2e-15 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 78 / 4e-15 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G160200 [exp] 77 / 6e-15 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.008G194000 [exp] 76 / 9e-15 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 75 / 3e-14 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 74 / 3e-14 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10002852 pacid=23181328 polypeptide=Lus10002852 locus=Lus10002852.g ID=Lus10002852.BGIv1.0 annot-version=v1.0 ATGAATATCAATGGTGGCAGATTGGCATTGGCGGCAATCCTTGGTCTCTCTCTGATTCTGCTCACTGAGCAAACCAAAAATAGCGACCCGTATAAGGTTC TTGGTGTTGAGAAGAACGCAAGCCAACGGGAAATCCAGAAAGCTTTTCACAAACTTTCTCTGCAGTATCACCCAGACAAGAACAAGAGTAAGAGCGCCCA AGCAAAGTTTGCCGAGATCAATAACGCATATGAAATCCTATCCGACGAAGAAAAGAGGAAACACTACGATCTATACGGAAATGACCAGGGAAACCCTGGA TTTGATGCTGGCTATCCCGATCCTAGAAGAGGATATGCACACTTCACAGGTGGACAGGGCTCGAACGGGTTCGGCTTCAAACCTGGTGAATGGCAGAATA TGGGTGGGGAAGGAGGCTCCCAGTCATTCTCATTTTCCTTTGGTGGTGGCATCAATGACATTTTATCCAATTTCTTTGGCGGTAATTCGTGGGATGCTCA GTCTGGTGGGTTTGGTGGCTCAACTCAGTCTCAAGGGAGGTCTCAATATGGTTCCAGAAGCTCTCCCAAGAACATCAGGGACATCAACTCTCAAGTCTTT AAGAAAGAAATTATCGATCTAGGAATGACGTGGCTTATACTTTCATATACTCCCTCTCTGAGAGACACTGAATACTACGAGTCAATCATACAGGAGGTTT CTGATCCACTTCAAGGAGCTTTAAAGGCTGGGAGCATAAACTGCGAGACTCAGAAATCGTTGTGCACGGAGCTGAGTATAACTCCTCGCAGGGAGCCTAG GGTGTTTCTCTATAGTTACAAGGATCAGAACAGTAAAGGCTCTTTGGTTGAATGTACTGGTGATTTGGTCCCAAAGAATTTGAAGGCTTTTTGCCAAGAC CATCTTCCAAGGTTCTCAACACGGATAAATCTGAAGGCCATCTCCAGCAATGTGGGGAAACTACCGAGAGTCTTGCTTCTTTCGACGAAACGAGATACAC CGGTGATGTGGCGAGCCCTCAGCAGGCTGTATCATAAGCGCTTCGTGTTAAATGACGCAGAAGTGCATGATGTTAACGACCCAATGGTGAAGGAGCTAGG AGTAGACAAACTTCCAGCCGTGGTAGGTTGGCTATCAAATGGAGAGAAACATGTCCTGAAGACCGGCATTTCGGCAAAGGATCTGAAATCAGGGATTCAG GAGCTTAGCAGGCTACTGGATGGGTTTGAAAAGAAGAACAAGAAGGTACCCAATTCATCTTCTGGTGAGGAAAAAGTGCCATTGCTTACTGGATCAAACT ACGACGATATATGCGGGGAGAAGATCCCGGTTTGCGTAATTGGTGCCTTCAGATCTTCACGAACAAGGGACAAGCTCGAATCCATTTTGTCCGCGGTTTC TCAGAAATCGCTATCGAGGCGGCCCAGTTCGGTGGCCGGCTCTCCAGACGCAGTATCGTACGCGCTCTTGGACGCTGGTAAGCAGCCAACGTTCATGACC GCATTCGATAGGCAAGGGTTCAAGTCGTCCGAGAATACCTTGATAGCCTACAAGGCTAAGAAGGGGAAGTTTGTGAAGTTCGAAGGTGAAATGAGCATAG AGCCAGTGGAGGCATTCATCAGTTCTGTTCTAAACGGCGATGTTCAGTTCACCAAAACTCGCCAGAAACCAGTGATCAAGTGA
AA sequence Show only first row Show all	>Lus10002852 pacid=23181328 polypeptide=Lus10002852 locus=Lus10002852.g ID=Lus10002852.BGIv1.0 annot-version=v1.0 MNINGGRLALAAILGLSLILLTEQTKNSDPYKVLGVEKNASQREIQKAFHKLSLQYHPDKNKSKSAQAKFAEINNAYEILSDEEKRKHYDLYGNDQGNPG FDAGYPDPRRGYAHFTGGQGSNGFGFKPGEWQNMGGEGGSQSFSFSFGGGINDILSNFFGGNSWDAQSGGFGGSTQSQGRSQYGSRSSPKNIRDINSQVF KKEIIDLGMTWLILSYTPSLRDTEYYESIIQEVSDPLQGALKAGSINCETQKSLCTELSITPRREPRVFLYSYKDQNSKGSLVECTGDLVPKNLKAFCQD HLPRFSTRINLKAISSNVGKLPRVLLLSTKRDTPVMWRALSRLYHKRFVLNDAEVHDVNDPMVKELGVDKLPAVVGWLSNGEKHVLKTGISAKDLKSGIQ ELSRLLDGFEKKNKKVPNSSSGEEKVPLLTGSNYDDICGEKIPVCVIGAFRSSRTRDKLESILSAVSQKSLSRRPSSVAGSPDAVSYALLDAGKQPTFMT AFDRQGFKSSENTLIAYKAKKGKFVKFEGEMSIEPVEAFISSVLNGDVQFTKTRQKPVIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10002852 [exp]	0	1
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	3.3	0.8636
AT5G35320			unknown protein		Lus10027608 [exp]	7.5	0.8230
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	7.7	0.8106
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	9.3	0.8282
AT5G65490			unknown protein		Lus10002654 [exp]	9.8	0.8160
					Lus10035559 [exp]	19.9	0.7091
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	22.7	0.7913
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	23.2	0.7728
AT1G44414			unknown protein		Lus10018166 [exp]	36.3	0.7488
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10041615 [exp]	37.7	0.7196

Compare expression of checked genes

Lus10002852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.